SMTL ID : 3w6z.1 (1 other biounit)

Crystal structure of NADP bound L-serine 3-dehydrogenase (K170M) from Hyperthermophilic Archaeon Pyrobaculum calidifontis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: G.27, L.28, G.29, I.30, M.31, N.50, R.51, T.52, K.55, M.83, V.84, S.85, D.89, Q.92, V.93, S.114, T.115, V.140, G.143, Q.144, G.250, F.251, K.252, H.255, K.258 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:V.140, A:F.251 Hydrogen bonds: A:L.28, A:I.30, A:M.31, A:G.32, A:N.50, A:N.50, A:T.52, A:T.52, A:V.84, A:S.85, A:Q.92, A:T.115, A:Q.144, A:G.250, A:K.258, A:K.258 Water bridges: A:G.29, A:R.51, A:R.51, A:R.51, A:R.51, A:K.55, A:K.55, A:Y.238, A:K.252, A:K.252, A:K.252, A:K.252, A:K.252 Salt bridges: A:R.51, A:K.55, A:K.252, A:H.255, A:H.255 pi-Cation interactions: A:R.51, A:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoneda, K. et al., Crystal structure of the NADP+and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis. Extremophiles (2018)

Release Date

2014-01-15

Peptides

6-phosphogluconate dehydrogenase, NAD-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

6-phosphogluconate dehydrogenase, NAD-binding protein

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