SMTL ID : 3w7x.2 (1 other biounit)

Crystal structure of E. coli YgjK D324N complexed with melibiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GLC- GLA: alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose(Non-covalent)

GLC-GLA.1: 5 residues within 4Å: Chain A: W.314, F.315, W.321, D.368, K.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.391, A:K.391

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.431, N.433, N.435, V.437, E.439, E.549 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.431, A:V.437, A:E.439, A:E.549

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyazaki, T. et al., Structure of a bacterial glycoside hydrolase family 63 enzyme in complex with its glycosynthase product, and insights into the substrate specificity. Febs J. (2013)

Release Date

2013-07-17

Peptides

Uncharacterized protein YgjK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Uncharacterized protein YgjK

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