SMTL ID : 3w8h.1

Crystal structure of CCM3 in complex with the C-terminal regulatory domain of STK25

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-2-2-mer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: M.10, V.11, H.192 Chain D: K.26, Q.27, S.28, G.30 Ligands: SO4.2 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Water bridges: A:M.10 Salt bridges: A:H.192 Hydrogen bonds: D:S.28 SO4.2: 6 residues within 4Å: Chain A: M.10, V.11, S.12, E.45 Chain D: S.28 Ligands: SO4.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:S.12, A:E.45, D:S.28 SO4.3: 7 residues within 4Å: Chain A: E.159, K.162 Chain D: K.22, K.26, V.32, E.36 Ligands: SO4.4 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:E.36 Water bridges: D:K.26, D:K.26, A:E.159, A:E.159 Salt bridges: D:K.22, D:K.26, A:K.162 SO4.4: 2 residues within 4Å: Chain A: H.155 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.155 SO4.5: 7 residues within 4Å: Chain A: D.80, V.81, Y.84, M.85, K.104, N.195, L.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.81, A:V.81 Water bridges: A:K.104 Salt bridges: A:K.104 SO4.6: 4 residues within 4Å: Chain A: D.79, D.80, E.82, R.101 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.79, A:D.79, A:D.80, A:D.80 Salt bridges: A:R.101 SO4.7: 5 residues within 4Å: Chain A: D.54 Chain B: K.24 Chain C: D.54 Chain D: K.24 Ligands: SO4.14 9 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 4 interactions with chain A, 2 interactions with chain D Water bridges: C:D.54, C:D.54, A:P.49, A:G.50, A:G.50, A:D.54, D:K.24 Salt bridges: B:K.24, D:K.24 SO4.8: 8 residues within 4Å: Chain B: K.26, Q.27, S.28, G.30 Chain C: M.10, V.11, H.192 Ligands: SO4.9 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Water bridges: C:M.10 Salt bridges: C:H.192 Hydrogen bonds: B:S.28 SO4.9: 6 residues within 4Å: Chain B: S.28 Chain C: M.10, V.11, S.12, E.45 Ligands: SO4.8 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.12, B:S.28 SO4.10: 7 residues within 4Å: Chain B: K.22, K.26, V.32, E.36 Chain C: E.159, K.162 Ligands: SO4.11 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:E.36 Water bridges: B:K.26, B:K.26, B:K.26, C:E.159 Salt bridges: B:K.22, B:K.26, C:K.162 SO4.11: 2 residues within 4Å: Chain C: H.155 Ligands: SO4.10 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:H.155 SO4.12: 7 residues within 4Å: Chain C: D.80, V.81, Y.84, M.85, K.104, N.195, L.198 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.80, C:V.81, C:V.81 Water bridges: C:K.104 Salt bridges: C:K.104 SO4.13: 4 residues within 4Å: Chain C: D.79, D.80, E.82, R.101 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.79, C:D.80, C:E.82 Salt bridges: C:R.101 SO4.14: 5 residues within 4Å: Chain A: D.54 Chain B: K.24 Chain C: D.54 Chain D: K.24 Ligands: SO4.7 9 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A, 1 interactions with chain D Water bridges: C:P.49, C:G.50, C:G.50, C:D.54, B:K.24, A:D.54, A:D.54 Salt bridges: B:K.24, D:K.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Structural Basis for the Unique Heterodimeric Assembly between Cerebral Cavernous Malformation 3 and Germinal Center Kinase III. Structure (2013)

Release Date

2013-07-03

Peptides

Programmed cell death protein 10: AC
Serine/threonine-protein kinase 25: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Programmed cell death protein 10

Serine/threonine-protein kinase 25

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