SMTL ID : 3w8s.1

Crystal structure of monomeric Na-GST-3, a glutathione s-transferase from the major human hookworm parasite Necator americanus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 10 residues within 4Å: Chain A: F.9, W.39, K.43, G.49, Q.50, L.51, P.52, Q.63, S.64 Chain B: D.97 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.50, A:L.51, A:L.51, A:Q.63, A:S.64, B:D.97 Water bridges: A:K.43, A:K.43, A:Q.63, A:F.65, A:K.96 Salt bridges: A:K.43, A:K.96 GSH.6: 10 residues within 4Å: Chain A: D.97 Chain B: F.9, W.39, K.43, G.49, Q.50, L.51, P.52, Q.63, S.64 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.50, B:L.51, B:L.51, B:Q.63, B:S.64, A:D.97 Water bridges: B:K.43, B:K.43, B:Q.63, B:F.65, B:K.96 Salt bridges: B:K.43, B:K.96

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: E.166, K.169, I.198, R.201, E.203 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.166 Water bridges: A:K.169, A:I.198, A:E.199, A:E.203, A:T.204 Salt bridges: A:K.169, A:R.201 SO4.7: 5 residues within 4Å: Chain B: E.166, K.169, I.198, R.201, E.203 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.166 Water bridges: B:K.169, B:I.198, B:E.199, B:E.203, B:T.204 Salt bridges: B:K.169, B:R.201

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: D.10, R.33, L.34, S.35, E.38 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.38, A:E.38 Water bridges: A:D.10, A:D.10, A:R.33 GOL.4: 5 residues within 4Å: Chain A: F.135, N.138, F.139, E.142 Chain B: P.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.138 GOL.5: 2 residues within 4Å: Chain A: F.9, H.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.36 Water bridges: A:H.36 GOL.8: 5 residues within 4Å: Chain B: D.10, R.33, L.34, S.35, E.38 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.38 Water bridges: B:D.10, B:D.10, B:R.33 GOL.9: 5 residues within 4Å: Chain A: P.47 Chain B: F.135, N.138, F.139, E.142 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.138 GOL.10: 2 residues within 4Å: Chain B: F.9, H.36 1 PLIP interactions: 1 interactions with chain B Water bridges: B:H.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kelleher, A. et al., Structure of monomeric Na-GST-3, a glutathione S-transferase from the major human hookworm parasite Necator americanus. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-08-14

Peptides

Glutathione S-transferase-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutathione S-transferase-3