SMTL ID : 3w9h.1

Structural basis for the inhibition of bacterial multidrug exporters

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

homo-trimer

Ligands

1 x P9D: [{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate(Non-covalent)

P9D.1: 15 residues within 4Å: Chain B: V.139, Q.176, L.177, F.178, G.179, I.277, A.279, Y.327, V.571, F.610, V.612, F.615, R.620, F.628, L.668 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.178, B:F.178, B:I.277, B:V.571, B:V.612, B:F.615, B:F.628, B:F.628, B:L.668 Hydrogen bonds: B:L.177, B:G.179, B:I.277 Salt bridges: B:R.620 pi-Stacking: B:F.178, B:F.178, B:F.610

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakashima, R. et al., Structural basis for the inhibition of bacterial multidrug exporters. Nature (2013)

Release Date

2013-07-03

Peptides

Acriflavine resistance protein B: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Acriflavine resistance protein B