- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.15 Å
- Oligo State
- homo-trimer
- Ligands
- 8 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.1: 10 residues within 4Å:- Chain A: L.454, F.458, F.459, G.460, Q.871, A.874, V.882
- Chain C: A.22, L.25, S.29
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:L.454, A:F.458, A:V.882, C:A.22
- Hydrogen bonds: A:G.460, A:Q.871, C:S.29
LMT.2: 7 residues within 4Å:- Chain A: I.27, L.28, L.30, V.341, L.377, F.380
- Ligands: LMT.7
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.27, A:V.341, A:L.377, A:F.380, A:F.380
LMT.3: 7 residues within 4Å:- Chain A: W.13, L.17, M.20, R.363, L.492, T.495, M.496
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.13, A:W.13, A:L.17
- Hydrogen bonds: A:W.13, A:R.363, A:R.363, A:T.495
LMT.5: 12 residues within 4Å:- Chain A: F.4, R.8, F.11
- Chain B: G.440, G.444, M.447, A.889, L.890, E.946, K.949, E.950, E.953
9 PLIP interactions:3 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:F.11, A:F.11, A:F.11, B:A.889, B:L.890
- Hydrogen bonds: B:G.440, B:A.889, B:K.949
- Salt bridges: B:K.949
LMT.6: 10 residues within 4Å:- Chain B: F.386, A.457, F.458, G.460, R.468, I.472, V.475, L.867, Q.871
- Ligands: LMT.7
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.386, B:F.386, B:F.458, B:F.458, B:I.472, B:V.475
- Salt bridges: B:R.468
LMT.7: 8 residues within 4Å:- Chain B: P.455, F.458, S.870, Q.871, A.874, L.875
- Ligands: LMT.2, LMT.6
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:P.455, B:F.458
- Hydrogen bonds: B:S.870, B:Q.871
LMT.8: 6 residues within 4Å:- Chain C: M.1, S.2, G.436, Q.439, I.483, L.486
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:I.483
- Hydrogen bonds: C:M.1, C:S.2, C:S.2, C:G.436
- Salt bridges: C:K.3
LMT.9: 8 residues within 4Å:- Chain C: L.454, P.455, F.458, F.459, S.870, Q.871, A.874, L.878
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:L.454, C:P.455, C:F.458, C:F.458, C:F.458, C:L.878
- Hydrogen bonds: C:S.870
- 1 x P9D: [{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate(Non-covalent)
P9D.4: 20 residues within 4Å:- Chain B: Q.46, R.128, F.136, V.139, K.151, Q.176, V.177, F.178, G.179, I.277, A.279, Y.327, F.573, F.610, V.612, F.615, R.620, F.628, M.630, L.672
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:F.136, B:F.178, B:I.277, B:Y.327, B:F.573, B:F.610, B:F.628, B:L.672
- Hydrogen bonds: B:K.151, B:G.179
- Salt bridges: B:R.128
- pi-Stacking: B:F.178, B:F.178
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakashima, R. et al., Structural basis for the inhibition of bacterial multidrug exporters. Nature (2013)
- Release Date
- 2013-07-03
- Peptides
- Multidrug resistance protein MexB: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.15 Å
- Oligo State
- homo-trimer
- Ligands
- 8 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 1 x P9D: [{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakashima, R. et al., Structural basis for the inhibition of bacterial multidrug exporters. Nature (2013)
- Release Date
- 2013-07-03
- Peptides
- Multidrug resistance protein MexB: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F - Membrane
-
We predict this structure to be a membrane protein.