- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 6 residues within 4Å:- Chain A: R.41, D.432, M.433, F.438, D.573, I.574
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.41, A:M.433, A:I.574
NA.27: 6 residues within 4Å:- Chain B: R.41, D.432, M.433, F.438, D.573, I.574
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.41, B:M.433, B:D.573, B:I.574
- 6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.3: 5 residues within 4Å:- Chain A: T.184, V.186, F.187, E.405
- Ligands: PEG.24
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.405, A:E.405
- Water bridges: A:V.186
PGE.4: 4 residues within 4Å:- Chain A: E.200, L.201, G.203
- Chain B: R.611
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.200
- Water bridges: B:R.611, B:R.611
PGE.5: 11 residues within 4Å:- Chain A: V.36, L.37, D.38, E.245, R.266, R.430, Y.538, D.540, R.543, Y.544
- Ligands: EDO.14
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.36, A:Y.538
- Water bridges: A:R.430, A:R.430
PGE.28: 5 residues within 4Å:- Chain B: T.184, V.186, F.187, E.405
- Ligands: PEG.49
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.405
- Water bridges: B:V.186
PGE.29: 4 residues within 4Å:- Chain A: R.611
- Chain B: E.200, L.201, G.203
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.200
- Water bridges: A:R.611, A:R.611
PGE.30: 11 residues within 4Å:- Chain B: V.36, L.37, D.38, E.245, R.266, R.430, Y.538, D.540, R.543, Y.544
- Ligands: EDO.39
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:V.36, B:D.540
- Water bridges: B:D.38, B:D.38, B:R.430, B:R.430
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.6: 2 residues within 4Å:- Chain A: N.118, D.120
1 PLIP interactions:1 interactions with chain A- Water bridges: A:V.121
PG4.7: 14 residues within 4Å:- Chain A: F.97, A.127, P.128, L.129, W.160, Y.288, Y.294, I.371, G.372, N.373, Y.374, F.399
- Chain B: W.351
- Ligands: PEG.19
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.127
PG4.31: 2 residues within 4Å:- Chain B: N.118, D.120
1 PLIP interactions:1 interactions with chain B- Water bridges: B:V.121
PG4.32: 14 residues within 4Å:- Chain A: W.351
- Chain B: F.97, A.127, P.128, L.129, W.160, Y.288, Y.294, I.371, G.372, N.373, Y.374, F.399
- Ligands: PEG.44
1 PLIP interactions:1 interactions with chain B- Water bridges: B:A.127
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.8: 6 residues within 4Å:- Chain A: V.181, I.182, D.183, T.184, G.185
- Ligands: EDO.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.183
- Water bridges: A:D.183
1PE.33: 6 residues within 4Å:- Chain B: V.181, I.182, D.183, T.184, G.185
- Ligands: EDO.34
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.183
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 4 residues within 4Å:- Chain A: R.109, R.180, V.181
- Ligands: 1PE.8
Ligand excluded by PLIPEDO.10: 4 residues within 4Å:- Chain A: D.409
- Chain B: V.448, Q.450, S.463
Ligand excluded by PLIPEDO.11: 5 residues within 4Å:- Chain A: A.7, G.35, V.36, F.241, D.242
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: I.354, N.355, Y.356, R.358
- Chain B: T.197
Ligand excluded by PLIPEDO.13: 5 residues within 4Å:- Chain A: Q.450, T.451, P.454, G.455, N.456
Ligand excluded by PLIPEDO.14: 8 residues within 4Å:- Chain A: Y.33, G.35, V.36, L.37, R.53, R.543, Y.544
- Ligands: PGE.5
Ligand excluded by PLIPEDO.15: 6 residues within 4Å:- Chain A: W.341, I.343, N.360, D.385
- Chain B: V.596
- Ligands: PEG.46
Ligand excluded by PLIPEDO.16: 4 residues within 4Å:- Chain A: G.455, N.456, E.457
- Chain B: P.279
Ligand excluded by PLIPEDO.17: 9 residues within 4Å:- Chain A: A.394, H.425, L.582, H.584, M.594, P.595, V.596, D.597
- Ligands: CU.1
Ligand excluded by PLIPEDO.18: 3 residues within 4Å:- Chain A: A.619, N.620
- Chain B: E.304
Ligand excluded by PLIPEDO.34: 4 residues within 4Å:- Chain B: R.109, R.180, V.181
- Ligands: 1PE.33
Ligand excluded by PLIPEDO.35: 4 residues within 4Å:- Chain A: V.448, Q.450, S.463
- Chain B: D.409
Ligand excluded by PLIPEDO.36: 5 residues within 4Å:- Chain B: A.7, G.35, V.36, F.241, D.242
Ligand excluded by PLIPEDO.37: 5 residues within 4Å:- Chain A: T.197
- Chain B: I.354, N.355, Y.356, R.358
Ligand excluded by PLIPEDO.38: 5 residues within 4Å:- Chain B: Q.450, T.451, P.454, G.455, N.456
Ligand excluded by PLIPEDO.39: 8 residues within 4Å:- Chain B: Y.33, G.35, V.36, L.37, R.53, R.543, Y.544
- Ligands: PGE.30
Ligand excluded by PLIPEDO.40: 6 residues within 4Å:- Chain A: V.596
- Chain B: W.341, I.343, N.360, D.385
- Ligands: PEG.21
Ligand excluded by PLIPEDO.41: 4 residues within 4Å:- Chain A: P.279
- Chain B: G.455, N.456, E.457
Ligand excluded by PLIPEDO.42: 9 residues within 4Å:- Chain B: A.394, H.425, L.582, H.584, M.594, P.595, V.596, D.597
- Ligands: CU.26
Ligand excluded by PLIPEDO.43: 3 residues within 4Å:- Chain A: E.304
- Chain B: A.619, N.620
Ligand excluded by PLIP- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.19: 10 residues within 4Å:- Chain A: L.93, E.94, F.97, P.128, Y.294, Y.299, T.370, I.371, G.372
- Ligands: PG4.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.93, A:G.372
PEG.20: 7 residues within 4Å:- Chain A: R.5, L.6, A.7, S.8, S.317, P.318, V.319
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.5, A:S.317
- Water bridges: A:S.317, A:V.319
PEG.21: 8 residues within 4Å:- Chain A: W.341, R.362, Y.381, E.391, K.393
- Chain B: W.341, G.342
- Ligands: EDO.40
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.362, A:R.362, A:Y.381, A:E.389, A:K.393, B:W.341
PEG.22: 4 residues within 4Å:- Chain B: E.478, A.479, D.480, R.485
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.478, B:R.485, B:R.485
- Water bridges: B:D.446, B:R.477
PEG.23: 2 residues within 4Å:- Chain A: R.464, R.466
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.464, A:R.464
PEG.24: 5 residues within 4Å:- Chain A: F.187, P.188, P.404, E.405
- Ligands: PGE.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.405
- Water bridges: A:G.406
PEG.44: 10 residues within 4Å:- Chain B: L.93, E.94, F.97, P.128, Y.294, Y.299, T.370, I.371, G.372
- Ligands: PG4.32
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.93, B:G.372
PEG.45: 7 residues within 4Å:- Chain B: R.5, L.6, A.7, S.8, S.317, P.318, V.319
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.5, B:S.317
- Water bridges: B:S.317, B:V.319
PEG.46: 8 residues within 4Å:- Chain A: W.341, G.342
- Chain B: W.341, R.362, Y.381, E.391, K.393
- Ligands: EDO.15
6 PLIP interactions:1 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:W.341, B:R.362, B:R.362, B:E.389, B:K.393
- Water bridges: B:Y.381
PEG.47: 4 residues within 4Å:- Chain A: E.478, A.479, D.480, R.485
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.480, A:R.485, A:R.485
- Water bridges: A:R.477
PEG.48: 2 residues within 4Å:- Chain B: R.464, R.466
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.464, B:R.464
PEG.49: 5 residues within 4Å:- Chain B: F.187, P.188, P.404, E.405
- Ligands: PGE.28
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.405
- Water bridges: B:G.406
- 2 x HDZ: NITROGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murakawa, T. et al., High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2. Acta Crystallogr.,Sect.D (2013)
- Release Date
- 2013-09-11
- Peptides
- Phenylethylamine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x HDZ: NITROGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Murakawa, T. et al., High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2. Acta Crystallogr.,Sect.D (2013)
- Release Date
- 2013-09-11
- Peptides
- Phenylethylamine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B