- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x BGC: beta-D-glucopyranose(Non-covalent)
BGC.3: 7 residues within 4Å:- Chain A: R.88, R.94, Y.130, E.149, R.191, F.214
- Ligands: BMA.4
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:R.88, A:R.88, A:R.94, A:R.94
- Water bridges: A:N.128, A:Y.130, C:R.276, C:R.276, C:R.276
- Salt bridges: A:R.94
BGC.7: 8 residues within 4Å:- Chain B: R.88, R.94, Y.130, E.149, R.191, F.214, I.215
- Ligands: BMA.8
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain F- Hydrogen bonds: B:R.88, B:R.88, B:R.94, B:R.94
- Water bridges: B:N.128, B:Y.130, F:R.276, F:R.276, F:R.276
- Salt bridges: B:R.94
BGC.11: 7 residues within 4Å:- Chain C: R.88, R.94, Y.130, E.149, R.191, F.214
- Ligands: BMA.12
10 PLIP interactions:3 interactions with chain E, 7 interactions with chain C- Water bridges: E:R.276, E:R.276, E:R.276, C:N.128, C:Y.130
- Hydrogen bonds: C:R.88, C:R.88, C:R.94, C:R.94
- Salt bridges: C:R.94
BGC.15: 8 residues within 4Å:- Chain D: R.88, R.94, Y.130, E.149, R.191, F.214, I.215
- Ligands: BMA.16
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain D- Water bridges: B:H.248, B:R.276, B:R.276, B:R.276, D:Y.130
- Hydrogen bonds: D:R.88, D:R.88, D:R.94, D:R.94
- Salt bridges: D:R.94
BGC.19: 7 residues within 4Å:- Chain E: R.88, R.94, Y.130, E.149, R.191, F.214
- Ligands: BMA.20
10 PLIP interactions:6 interactions with chain E, 4 interactions with chain A- Hydrogen bonds: E:R.88, E:R.88, E:R.94, E:R.94
- Water bridges: E:N.128, A:H.248, A:R.276, A:R.276, A:R.276
- Salt bridges: E:R.94
BGC.23: 8 residues within 4Å:- Chain F: R.88, R.94, Y.130, E.149, R.191, F.214, I.215
- Ligands: BMA.24
10 PLIP interactions:6 interactions with chain F, 4 interactions with chain D- Hydrogen bonds: F:R.88, F:R.88, F:R.94, F:R.94
- Water bridges: F:Y.130, D:H.248, D:R.276, D:R.276, D:R.276
- Salt bridges: F:R.94
- 6 x BMA: beta-D-mannopyranose(Non-covalent)
BMA.4: 11 residues within 4Å:- Chain A: N.73, R.88, Y.130, D.131, R.191, Y.284, V.319, F.324, D.344
- Ligands: PO4.1, BGC.3
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:N.73, A:N.73, A:R.88, A:D.131, A:R.191
- Water bridges: A:K.254, A:K.254, A:D.344
- Salt bridges: A:R.191, A:K.254
BMA.8: 11 residues within 4Å:- Chain B: N.73, R.88, Y.130, D.131, R.191, Y.284, V.319, F.324, D.344
- Ligands: PO4.5, BGC.7
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:N.73, B:N.73, B:R.88, B:D.131, B:R.191, B:Y.284
- Water bridges: B:D.131, B:K.254, B:K.254, B:D.344
- Salt bridges: B:R.191, B:K.254
BMA.12: 11 residues within 4Å:- Chain C: N.73, R.88, Y.130, D.131, R.191, Y.284, V.319, F.324, D.344
- Ligands: PO4.9, BGC.11
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:N.73, C:N.73, C:R.88, C:D.131, C:R.191
- Water bridges: C:K.254, C:K.254, C:D.344
- Salt bridges: C:R.191, C:K.254
BMA.16: 11 residues within 4Å:- Chain D: N.73, R.88, Y.130, D.131, R.191, Y.284, V.319, F.324, D.344
- Ligands: PO4.13, BGC.15
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:N.73, D:N.73, D:R.88, D:D.131, D:R.191, D:Y.284
- Water bridges: D:D.131, D:K.254, D:K.254, D:D.344
- Salt bridges: D:R.191, D:K.254
BMA.20: 11 residues within 4Å:- Chain E: N.73, R.88, Y.130, D.131, R.191, Y.284, V.319, F.324, D.344
- Ligands: PO4.17, BGC.19
10 PLIP interactions:10 interactions with chain E- Hydrogen bonds: E:N.73, E:N.73, E:R.88, E:D.131, E:R.191
- Water bridges: E:K.254, E:K.254, E:D.344
- Salt bridges: E:R.191, E:K.254
BMA.24: 11 residues within 4Å:- Chain F: N.73, R.88, Y.130, D.131, R.191, Y.284, V.319, F.324, D.344
- Ligands: PO4.21, BGC.23
12 PLIP interactions:12 interactions with chain F- Hydrogen bonds: F:N.73, F:N.73, F:R.88, F:D.131, F:R.191, F:Y.284
- Water bridges: F:D.131, F:K.254, F:K.254, F:D.344
- Salt bridges: F:R.191, F:K.254
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakae, S. et al., Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP. J.Mol.Biol. (2013)
- Release Date
- 2013-09-04
- Peptides
- 4-O-beta-D-mannosyl-D-glucose phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x BGC: beta-D-glucopyranose(Non-covalent)
- 6 x BMA: beta-D-mannopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakae, S. et al., Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP. J.Mol.Biol. (2013)
- Release Date
- 2013-09-04
- Peptides
- 4-O-beta-D-mannosyl-D-glucose phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B