SMTL ID : 3wb0.1

HcgB from Methanocaldococcus jannaschii in complex with light-decomposed FeGP cofactor of [Fe]-hydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-tetramer

Ligands

4 x FEG: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine(Non-covalent)

FEG.1: 17 residues within 4Å: Chain A: K.50, D.77, R.102, G.103, R.104, G.111, S.112, S.131, S.132, H.135, E.137, I.139, R.142 Chain B: R.20, R.21, G.22, D.23 20 PLIP interactions: 13 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:R.102, A:R.102, A:R.104, A:R.104, A:S.132, A:E.137, A:E.137, A:I.139, B:R.20, B:R.21, B:D.23, B:D.23, B:D.23, B:D.23 Water bridges: A:K.86, A:K.86, A:S.112 Salt bridges: A:K.50, A:R.102 Hydrophobic interactions: B:R.20 FEG.2: 18 residues within 4Å: Chain A: R.20, R.21, G.22, D.23 Chain B: K.50, D.77, R.102, G.103, R.104, G.111, S.112, P.130, S.131, S.132, H.135, E.137, I.139, R.142 21 PLIP interactions: 7 interactions with chain A, 14 interactions with chain B Hydrophobic interactions: A:R.20 Hydrogen bonds: A:R.20, A:R.21, A:R.21, A:D.23, A:D.23, A:D.23, B:R.102, B:R.102, B:R.104, B:S.132, B:E.137, B:E.137 Water bridges: B:K.86, B:K.86, B:R.104, B:S.112, B:I.139 Salt bridges: B:K.50, B:K.86, B:R.102 FEG.3: 18 residues within 4Å: Chain C: K.50, D.77, R.102, G.103, R.104, G.111, S.112, P.130, S.131, S.132, H.135, E.137, I.139, R.142 Chain D: R.20, R.21, G.22, D.23 19 PLIP interactions: 13 interactions with chain C, 6 interactions with chain D Hydrogen bonds: C:R.102, C:R.102, C:R.104, C:R.104, C:S.132, C:E.137, C:E.137, D:R.20, D:D.23, D:D.23, D:D.23, D:D.23 Water bridges: C:K.50, C:K.86, C:K.86, C:S.112 Salt bridges: C:K.50, C:R.102 Hydrophobic interactions: D:R.20 FEG.4: 17 residues within 4Å: Chain C: R.20, R.21, G.22, D.23 Chain D: K.50, D.77, R.102, G.103, R.104, G.111, S.112, S.131, S.132, H.135, E.137, I.139, R.142 17 PLIP interactions: 12 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:R.102, D:R.102, D:R.104, D:R.104, D:S.132, D:E.137, D:E.137, D:I.139, C:R.20, C:R.21, C:D.23, C:D.23, C:D.23 Water bridges: D:D.77, D:K.86 Salt bridges: D:K.50, D:R.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujishiro, T. et al., Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis. Angew.Chem.Int.Ed.Engl. (2013)

Release Date

2014-02-05

Peptides

Uncharacterized protein MJ0488: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Uncharacterized protein MJ0488

Related Entries With Identical Sequence