SMTL ID : 3wba.1

Rice Os3BGlu6 E178Q with Covalent Glucosyl Moiety from p-nitrophenyl glucopyranoside.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Post Translational Modification)

GLC.1: 12 residues within 4Å: Chain A: Q.32, H.133, N.178, Q.179, Y.322, W.367, E.395, W.445, E.452, W.453, F.461 Ligands: GOL.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.32, A:H.133, A:N.178, A:Q.179, A:N.320, A:Y.322, A:W.453 Water bridges: A:R.89, A:N.450

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: V.37, K.38, R.42, G.43, Q.44, D.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.38, A:R.42, A:R.42, A:Q.44 GOL.3: 4 residues within 4Å: Chain A: Q.179, Y.322, W.367 Ligands: GLC.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.179, A:E.395 Water bridges: A:D.250, A:D.250 GOL.4: 6 residues within 4Å: Chain A: H.181, I.185, F.273, W.277, T.342, L.343 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.181, A:F.273, A:T.342 Water bridges: A:D.189, A:T.342 GOL.5: 8 residues within 4Å: Chain A: N.403, P.404, I.406, S.407, I.408, A.411, F.465, K.469 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.469 Water bridges: A:N.403, A:N.403, A:I.408, A:R.460, A:R.460, A:R.460 GOL.6: 5 residues within 4Å: Chain A: V.65, A.66, Y.457, Y.468, L.472 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.66 Water bridges: A:V.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hua, Y. et al., Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice beta-d-glucosidase. Arch.Biochem.Biophys. (2013)

Release Date

2013-09-04

Peptides

Beta-glucosidase 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-glucosidase 6