SMTL ID : 3wbp.1

Crystal structure of carbohydrate recognition domain of Blood Dendritic Cell Antigen-2 (BDCA2) lectin (crystal form-1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: F.39, S.41, T.42, N.53, M.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.53, A:N.53 EDO.2: 5 residues within 4Å: Chain B: F.39, S.41, T.42, G.43, N.53 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.42, B:G.43, B:N.53, B:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., Crystal structures of carbohydrate recognition domain of blood dendritic cell antigen-2 (BDCA2) reveal a common domain-swapped dimer. Proteins (2014)

Release Date

2013-12-25

Peptides

C-type lectin domain family 4 member C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C-type lectin domain family 4 member C