SMTL ID : 3wcw.1

The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: MG bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x NAG- NAG- MAN- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-MAN-MAN-MAN-FUC.1: 4 residues within 4Å: Chain A: D.81 Chain D: N.55, N.58, S.61 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.81 NAG-NAG-MAN-MAN-MAN-FUC.2: 4 residues within 4Å: Chain E: D.81 Chain H: N.55, N.58, S.61 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:D.81 NAG-NAG-MAN-MAN-MAN-FUC.22: 4 residues within 4Å: Chain I: D.81 Chain L: N.55, N.58, S.61 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:D.81 NAG-NAG-MAN-MAN-MAN-FUC.23: 4 residues within 4Å: Chain M: D.81 Chain P: N.55, N.58, S.61 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:D.81 NAG-NAG-MAN-MAN-MAN-FUC.43: 4 residues within 4Å: Chain Q: D.81 Chain T: N.55, N.58, S.61 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:D.81 NAG-NAG-MAN-MAN-MAN-FUC.44: 4 residues within 4Å: Chain U: D.81 Chain X: N.55, N.58, S.61 1 PLIP interactions: 1 interactions with chain U Hydrogen bonds: U:D.81

24 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 20 residues within 4Å: Chain A: L.45, F.46, S.48, V.49, H.62, R.65, V.66, Q.93, H.94, R.97, L.99, N.103, F.104, F.107, Y.132, I.135, I.139 Chain D: H.94, Q.98 Ligands: OXY.4 24 PLIP interactions: 22 interactions with chain A, 2 interactions with chain D, Hydrophobic interactions: A:L.45, A:F.46, A:F.46, A:V.49, A:L.99, A:N.103, A:F.104, A:F.104, A:F.104, A:F.107, A:F.107, A:F.107, A:Y.132, A:I.135 Hydrogen bonds: A:Q.93, D:Q.98 Water bridges: A:R.65 Salt bridges: A:R.97, D:H.94 pi-Stacking: A:H.62, A:H.62, A:H.94, A:H.94 Metal complexes: A:H.94 HEM.6: 20 residues within 4Å: Chain B: M.46, F.47, R.49, V.50, H.63, R.66, V.67, G.70, L.71, L.91, Q.94, H.95, R.98, V.100, Q.104, Y.105, V.108 Chain C: H.94, Q.98 Ligands: OXY.7 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain C, Hydrophobic interactions: B:M.46, B:F.47, B:F.47, B:L.91, B:Q.94, B:V.100, B:Q.104, B:Y.105, B:V.108, B:V.108 Salt bridges: B:R.49, B:R.98, C:H.94 pi-Stacking: B:H.63, B:H.63, B:H.95, B:H.95 Metal complexes: B:H.95 HEM.9: 20 residues within 4Å: Chain B: H.90, Q.94 Chain C: L.50, F.51, R.53, V.54, H.67, R.70, V.71, L.75, Q.98, H.99, R.102, V.105, G.109, F.110, I.113, T.141, M.144 Ligands: OXY.10 21 PLIP interactions: 2 interactions with chain B, 19 interactions with chain C, Hydrogen bonds: B:Q.94, C:Q.98 Salt bridges: B:H.90, C:R.53, C:R.102 Hydrophobic interactions: C:L.50, C:F.51, C:V.71, C:L.75, C:V.105, C:F.110, C:F.110, C:I.113, C:T.141 Water bridges: C:H.67, C:R.70 pi-Stacking: C:H.67, C:H.99, C:H.99 pi-Cation interactions: C:H.99 Metal complexes: C:H.99 HEM.11: 20 residues within 4Å: Chain A: H.89, Q.93 Chain D: L.40, S.47, L.50, F.51, N.53, V.54, H.67, R.70, V.71, L.75, Q.98, H.99, R.102, L.105, Y.109, F.110, M.113 Ligands: OXY.12 23 PLIP interactions: 20 interactions with chain D, 3 interactions with chain A, Hydrophobic interactions: D:L.40, D:L.50, D:F.51, D:F.51, D:R.102, D:L.105, D:Y.109, D:F.110, D:F.110, D:F.110, D:F.110, D:M.113 Hydrogen bonds: D:Q.98, A:Q.93 Salt bridges: D:R.102, A:H.89 pi-Stacking: D:H.67, D:H.99, D:H.99 pi-Cation interactions: D:H.67, D:H.99 Metal complexes: D:H.99 Water bridges: A:R.72 HEM.13: 20 residues within 4Å: Chain E: L.45, F.46, S.48, V.49, H.62, R.65, L.90, Q.93, H.94, R.97, L.99, N.103, F.104, F.107, Y.132, I.135, I.139 Chain H: H.94, Q.98 Ligands: OXY.14 29 PLIP interactions: 27 interactions with chain E, 2 interactions with chain H, Hydrophobic interactions: E:L.45, E:F.46, E:F.46, E:V.49, E:L.90, E:L.99, E:N.103, E:F.104, E:F.104, E:F.104, E:F.107, E:F.107, E:F.107, E:F.107, E:Y.132, E:I.135, E:I.139 Hydrogen bonds: E:S.48, E:Q.93, H:Q.98 Water bridges: E:R.65 Salt bridges: E:R.97, H:H.94 pi-Stacking: E:H.62, E:H.62, E:H.94, E:H.94, E:H.94 Metal complexes: E:H.94 HEM.15: 18 residues within 4Å: Chain F: M.46, F.47, R.49, H.63, R.66, V.67, L.71, L.91, Q.94, H.95, R.98, V.100, Q.104, Y.105, V.108 Chain G: H.94, Q.98 Ligands: OXY.16 17 PLIP interactions: 16 interactions with chain F, 1 interactions with chain G, Hydrophobic interactions: F:M.46, F:F.47, F:L.91, F:L.91, F:V.100, F:Q.104, F:Y.105, F:V.108, F:V.108 Water bridges: F:R.66 Salt bridges: F:R.49, F:R.98, G:H.94 pi-Stacking: F:H.63, F:H.95, F:H.95 Metal complexes: F:H.95 HEM.18: 21 residues within 4Å: Chain F: H.90, Q.94 Chain G: L.50, F.51, R.53, V.54, H.67, R.70, V.71, G.74, L.75, Q.98, H.99, R.102, V.105, G.109, F.110, I.113, T.141, M.144 Ligands: OXY.19 15 PLIP interactions: 14 interactions with chain G, 1 interactions with chain F, Hydrophobic interactions: G:F.51, G:V.71, G:F.110, G:F.110, G:I.113, G:T.141 Hydrogen bonds: G:Q.98 Salt bridges: G:R.53, G:R.102, F:H.90 pi-Stacking: G:H.67, G:H.99, G:H.99, G:H.99 Metal complexes: G:H.99 HEM.20: 20 residues within 4Å: Chain E: H.89, Q.93 Chain H: S.47, L.50, F.51, N.53, V.54, H.67, R.70, V.71, L.75, L.95, Q.98, H.99, R.102, L.105, Y.109, F.110, M.113 Ligands: OXY.21 21 PLIP interactions: 19 interactions with chain H, 2 interactions with chain E, Hydrophobic interactions: H:L.50, H:F.51, H:R.70, H:L.95, H:L.105, H:L.105, H:Y.109, H:F.110, H:F.110, H:M.113 Hydrogen bonds: H:V.54, H:Q.98, E:Q.93 Salt bridges: H:H.67, H:R.102, E:H.89 pi-Stacking: H:H.67, H:H.99, H:H.99 pi-Cation interactions: H:H.99 Metal complexes: H:H.99 HEM.24: 20 residues within 4Å: Chain I: L.45, F.46, S.48, V.49, H.62, R.65, V.66, Q.93, H.94, R.97, L.99, N.103, F.104, F.107, Y.132, I.135, I.139 Chain L: H.94, Q.98 Ligands: OXY.25 24 PLIP interactions: 22 interactions with chain I, 2 interactions with chain L, Hydrophobic interactions: I:L.45, I:F.46, I:F.46, I:V.49, I:L.99, I:N.103, I:F.104, I:F.104, I:F.104, I:F.107, I:F.107, I:F.107, I:Y.132, I:I.135 Hydrogen bonds: I:Q.93, L:Q.98 Water bridges: I:R.65 Salt bridges: I:R.97, L:H.94 pi-Stacking: I:H.62, I:H.62, I:H.94, I:H.94 Metal complexes: I:H.94 HEM.27: 20 residues within 4Å: Chain J: M.46, F.47, R.49, V.50, H.63, R.66, V.67, G.70, L.71, L.91, Q.94, H.95, R.98, V.100, Q.104, Y.105, V.108 Chain K: H.94, Q.98 Ligands: OXY.28 18 PLIP interactions: 17 interactions with chain J, 1 interactions with chain K, Hydrophobic interactions: J:M.46, J:F.47, J:F.47, J:L.91, J:Q.94, J:V.100, J:Q.104, J:Y.105, J:V.108, J:V.108 Salt bridges: J:R.49, J:R.98, K:H.94 pi-Stacking: J:H.63, J:H.63, J:H.95, J:H.95 Metal complexes: J:H.95 HEM.30: 20 residues within 4Å: Chain J: H.90, Q.94 Chain K: L.50, F.51, R.53, V.54, H.67, R.70, V.71, L.75, Q.98, H.99, R.102, V.105, G.109, F.110, I.113, T.141, M.144 Ligands: OXY.31 21 PLIP interactions: 19 interactions with chain K, 2 interactions with chain J, Hydrophobic interactions: K:L.50, K:F.51, K:V.71, K:L.75, K:V.105, K:F.110, K:F.110, K:I.113, K:T.141 Hydrogen bonds: K:Q.98, J:Q.94 Water bridges: K:H.67, K:R.70 Salt bridges: K:R.53, K:R.102, J:H.90 pi-Stacking: K:H.67, K:H.99, K:H.99 pi-Cation interactions: K:H.99 Metal complexes: K:H.99 HEM.32: 20 residues within 4Å: Chain I: H.89, Q.93 Chain L: L.40, S.47, L.50, F.51, N.53, V.54, H.67, R.70, V.71, L.75, Q.98, H.99, R.102, L.105, Y.109, F.110, M.113 Ligands: OXY.33 23 PLIP interactions: 20 interactions with chain L, 3 interactions with chain I, Hydrophobic interactions: L:L.40, L:L.50, L:F.51, L:F.51, L:R.102, L:L.105, L:Y.109, L:F.110, L:F.110, L:F.110, L:F.110, L:M.113 Hydrogen bonds: L:Q.98, I:Q.93 Salt bridges: L:R.102, I:H.89 pi-Stacking: L:H.67, L:H.99, L:H.99 pi-Cation interactions: L:H.67, L:H.99 Metal complexes: L:H.99 Water bridges: I:R.72 HEM.34: 20 residues within 4Å: Chain M: L.45, F.46, S.48, V.49, H.62, R.65, L.90, Q.93, H.94, R.97, L.99, N.103, F.104, F.107, Y.132, I.135, I.139 Chain P: H.94, Q.98 Ligands: OXY.35 29 PLIP interactions: 27 interactions with chain M, 2 interactions with chain P, Hydrophobic interactions: M:L.45, M:F.46, M:F.46, M:V.49, M:L.90, M:L.99, M:N.103, M:F.104, M:F.104, M:F.104, M:F.107, M:F.107, M:F.107, M:F.107, M:Y.132, M:I.135, M:I.139 Hydrogen bonds: M:S.48, M:Q.93, P:Q.98 Water bridges: M:R.65 Salt bridges: M:R.97, P:H.94 pi-Stacking: M:H.62, M:H.62, M:H.94, M:H.94, M:H.94 Metal complexes: M:H.94 HEM.36: 18 residues within 4Å: Chain N: M.46, F.47, R.49, H.63, R.66, V.67, L.71, L.91, Q.94, H.95, R.98, V.100, Q.104, Y.105, V.108 Chain O: H.94, Q.98 Ligands: OXY.37 17 PLIP interactions: 16 interactions with chain N, 1 interactions with chain O, Hydrophobic interactions: N:M.46, N:F.47, N:L.91, N:L.91, N:V.100, N:Q.104, N:Y.105, N:V.108, N:V.108 Water bridges: N:R.66 Salt bridges: N:R.49, N:R.98, O:H.94 pi-Stacking: N:H.63, N:H.95, N:H.95 Metal complexes: N:H.95 HEM.39: 21 residues within 4Å: Chain N: H.90, Q.94 Chain O: L.50, F.51, R.53, V.54, H.67, R.70, V.71, G.74, L.75, Q.98, H.99, R.102, V.105, G.109, F.110, I.113, T.141, M.144 Ligands: OXY.40 15 PLIP interactions: 14 interactions with chain O, 1 interactions with chain N, Hydrophobic interactions: O:F.51, O:V.71, O:F.110, O:F.110, O:I.113, O:T.141 Hydrogen bonds: O:Q.98 Salt bridges: O:R.53, O:R.102, N:H.90 pi-Stacking: O:H.67, O:H.99, O:H.99, O:H.99 Metal complexes: O:H.99 HEM.41: 20 residues within 4Å: Chain M: H.89, Q.93 Chain P: S.47, L.50, F.51, N.53, V.54, H.67, R.70, V.71, L.75, L.95, Q.98, H.99, R.102, L.105, Y.109, F.110, M.113 Ligands: OXY.42 21 PLIP interactions: 19 interactions with chain P, 2 interactions with chain M, Hydrophobic interactions: P:L.50, P:F.51, P:R.70, P:L.95, P:L.105, P:L.105, P:Y.109, P:F.110, P:F.110, P:M.113 Hydrogen bonds: P:V.54, P:Q.98, M:Q.93 Salt bridges: P:H.67, P:R.102, M:H.89 pi-Stacking: P:H.67, P:H.99, P:H.99 pi-Cation interactions: P:H.99 Metal complexes: P:H.99 HEM.45: 20 residues within 4Å: Chain Q: L.45, F.46, S.48, V.49, H.62, R.65, V.66, Q.93, H.94, R.97, L.99, N.103, F.104, F.107, Y.132, I.135, I.139 Chain T: H.94, Q.98 Ligands: OXY.46 24 PLIP interactions: 22 interactions with chain Q, 2 interactions with chain T, Hydrophobic interactions: Q:L.45, Q:F.46, Q:F.46, Q:V.49, Q:L.99, Q:N.103, Q:F.104, Q:F.104, Q:F.104, Q:F.107, Q:F.107, Q:F.107, Q:Y.132, Q:I.135 Hydrogen bonds: Q:Q.93, T:Q.98 Water bridges: Q:R.65 Salt bridges: Q:R.97, T:H.94 pi-Stacking: Q:H.62, Q:H.62, Q:H.94, Q:H.94 Metal complexes: Q:H.94 HEM.48: 20 residues within 4Å: Chain R: M.46, F.47, R.49, V.50, H.63, R.66, V.67, G.70, L.71, L.91, Q.94, H.95, R.98, V.100, Q.104, Y.105, V.108 Chain S: H.94, Q.98 Ligands: OXY.49 18 PLIP interactions: 17 interactions with chain R, 1 interactions with chain S, Hydrophobic interactions: R:M.46, R:F.47, R:F.47, R:L.91, R:Q.94, R:V.100, R:Q.104, R:Y.105, R:V.108, R:V.108 Salt bridges: R:R.49, R:R.98, S:H.94 pi-Stacking: R:H.63, R:H.63, R:H.95, R:H.95 Metal complexes: R:H.95 HEM.51: 20 residues within 4Å: Chain R: H.90, Q.94 Chain S: L.50, F.51, R.53, V.54, H.67, R.70, V.71, L.75, Q.98, H.99, R.102, V.105, G.109, F.110, I.113, T.141, M.144 Ligands: OXY.52 21 PLIP interactions: 19 interactions with chain S, 2 interactions with chain R, Hydrophobic interactions: S:L.50, S:F.51, S:V.71, S:L.75, S:V.105, S:F.110, S:F.110, S:I.113, S:T.141 Hydrogen bonds: S:Q.98, R:Q.94 Water bridges: S:H.67, S:R.70 Salt bridges: S:R.53, S:R.102, R:H.90 pi-Stacking: S:H.67, S:H.99, S:H.99 pi-Cation interactions: S:H.99 Metal complexes: S:H.99 HEM.53: 20 residues within 4Å: Chain Q: H.89, Q.93 Chain T: L.40, S.47, L.50, F.51, N.53, V.54, H.67, R.70, V.71, L.75, Q.98, H.99, R.102, L.105, Y.109, F.110, M.113 Ligands: OXY.54 23 PLIP interactions: 3 interactions with chain Q, 20 interactions with chain T, Hydrogen bonds: Q:Q.93, T:Q.98 Water bridges: Q:R.72 Salt bridges: Q:H.89, T:R.102 Hydrophobic interactions: T:L.40, T:L.50, T:F.51, T:F.51, T:R.102, T:L.105, T:Y.109, T:F.110, T:F.110, T:F.110, T:F.110, T:M.113 pi-Stacking: T:H.67, T:H.99, T:H.99 pi-Cation interactions: T:H.67, T:H.99 Metal complexes: T:H.99 HEM.55: 20 residues within 4Å: Chain U: L.45, F.46, S.48, V.49, H.62, R.65, L.90, Q.93, H.94, R.97, L.99, N.103, F.104, F.107, Y.132, I.135, I.139 Chain X: H.94, Q.98 Ligands: OXY.56 29 PLIP interactions: 27 interactions with chain U, 2 interactions with chain X, Hydrophobic interactions: U:L.45, U:F.46, U:F.46, U:V.49, U:L.90, U:L.99, U:N.103, U:F.104, U:F.104, U:F.104, U:F.107, U:F.107, U:F.107, U:F.107, U:Y.132, U:I.135, U:I.139 Hydrogen bonds: U:S.48, U:Q.93, X:Q.98 Water bridges: U:R.65 Salt bridges: U:R.97, X:H.94 pi-Stacking: U:H.62, U:H.62, U:H.94, U:H.94, U:H.94 Metal complexes: U:H.94 HEM.57: 18 residues within 4Å: Chain V: M.46, F.47, R.49, H.63, R.66, V.67, L.71, L.91, Q.94, H.95, R.98, V.100, Q.104, Y.105, V.108 Chain W: H.94, Q.98 Ligands: OXY.58 17 PLIP interactions: 16 interactions with chain V, 1 interactions with chain W, Hydrophobic interactions: V:M.46, V:F.47, V:L.91, V:L.91, V:V.100, V:Q.104, V:Y.105, V:V.108, V:V.108 Water bridges: V:R.66 Salt bridges: V:R.49, V:R.98, W:H.94 pi-Stacking: V:H.63, V:H.95, V:H.95 Metal complexes: V:H.95 HEM.60: 21 residues within 4Å: Chain V: H.90, Q.94 Chain W: L.50, F.51, R.53, V.54, H.67, R.70, V.71, G.74, L.75, Q.98, H.99, R.102, V.105, G.109, F.110, I.113, T.141, M.144 Ligands: OXY.61 15 PLIP interactions: 14 interactions with chain W, 1 interactions with chain V, Hydrophobic interactions: W:F.51, W:V.71, W:F.110, W:F.110, W:I.113, W:T.141 Hydrogen bonds: W:Q.98 Salt bridges: W:R.53, W:R.102, V:H.90 pi-Stacking: W:H.67, W:H.99, W:H.99, W:H.99 Metal complexes: W:H.99 HEM.62: 20 residues within 4Å: Chain U: H.89, Q.93 Chain X: S.47, L.50, F.51, N.53, V.54, H.67, R.70, V.71, L.75, L.95, Q.98, H.99, R.102, L.105, Y.109, F.110, M.113 Ligands: OXY.63 21 PLIP interactions: 19 interactions with chain X, 2 interactions with chain U, Hydrophobic interactions: X:L.50, X:F.51, X:R.70, X:L.95, X:L.105, X:L.105, X:Y.109, X:F.110, X:F.110, X:M.113 Hydrogen bonds: X:V.54, X:Q.98, U:Q.93 Salt bridges: X:H.67, X:R.102, U:H.89 pi-Stacking: X:H.67, X:H.99, X:H.99 pi-Cation interactions: X:H.99 Metal complexes: X:H.99

24 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.4: 6 residues within 4Å: Chain A: W.32, F.46, H.62, V.66, H.94 Ligands: HEM.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.62 OXY.7: 6 residues within 4Å: Chain B: W.33, F.47, H.63, V.67, H.95 Ligands: HEM.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.63 OXY.10: 6 residues within 4Å: Chain C: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.67 OXY.12: 6 residues within 4Å: Chain D: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.11 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.67 OXY.14: 6 residues within 4Å: Chain E: W.32, F.46, H.62, V.66, H.94 Ligands: HEM.13 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:H.62 OXY.16: 6 residues within 4Å: Chain F: W.33, F.47, H.63, V.67, H.95 Ligands: HEM.15 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:H.63 OXY.19: 6 residues within 4Å: Chain G: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.18 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:H.67 OXY.21: 6 residues within 4Å: Chain H: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.20 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:H.67 OXY.25: 6 residues within 4Å: Chain I: W.32, F.46, H.62, V.66, H.94 Ligands: HEM.24 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:H.62 OXY.28: 6 residues within 4Å: Chain J: W.33, F.47, H.63, V.67, H.95 Ligands: HEM.27 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:H.63 OXY.31: 6 residues within 4Å: Chain K: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.30 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:H.67 OXY.33: 6 residues within 4Å: Chain L: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.32 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:H.67 OXY.35: 6 residues within 4Å: Chain M: W.32, F.46, H.62, V.66, H.94 Ligands: HEM.34 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:H.94 OXY.37: 6 residues within 4Å: Chain N: W.33, F.47, H.63, V.67, H.95 Ligands: HEM.36 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:H.63 OXY.40: 6 residues within 4Å: Chain O: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.39 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:H.67 OXY.42: 6 residues within 4Å: Chain P: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.41 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:H.67 OXY.46: 6 residues within 4Å: Chain Q: W.32, F.46, H.62, V.66, H.94 Ligands: HEM.45 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:H.62 OXY.49: 6 residues within 4Å: Chain R: W.33, F.47, H.63, V.67, H.95 Ligands: HEM.48 1 PLIP interactions: 1 interactions with chain R Hydrogen bonds: R:H.63 OXY.52: 6 residues within 4Å: Chain S: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.51 No protein-ligand interaction detected (PLIP) OXY.54: 6 residues within 4Å: Chain T: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.53 1 PLIP interactions: 1 interactions with chain T Hydrogen bonds: T:H.67 OXY.56: 6 residues within 4Å: Chain U: W.32, F.46, H.62, V.66, H.94 Ligands: HEM.55 1 PLIP interactions: 1 interactions with chain U Hydrogen bonds: U:H.62 OXY.58: 6 residues within 4Å: Chain V: W.33, F.47, H.63, V.67, H.95 Ligands: HEM.57 1 PLIP interactions: 1 interactions with chain V Hydrogen bonds: V:H.63 OXY.61: 6 residues within 4Å: Chain W: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.60 1 PLIP interactions: 1 interactions with chain W Hydrogen bonds: W:H.67 OXY.63: 6 residues within 4Å: Chain X: F.37, F.51, H.67, V.71, H.99 Ligands: HEM.62 1 PLIP interactions: 1 interactions with chain X Hydrogen bonds: X:H.67

9 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain B: N.106, E.109, D.135 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.109, B:E.109, B:D.135, B:D.135 MG.17: 3 residues within 4Å: Chain F: N.106, E.109, D.135 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.109, F:E.109, F:D.135 MG.26: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.29: 3 residues within 4Å: Chain J: N.106, E.109, D.135 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:E.109, J:E.109, J:D.135, J:D.135 MG.38: 3 residues within 4Å: Chain N: N.106, E.109, D.135 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.109, N:E.109, N:D.135 MG.47: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.50: 3 residues within 4Å: Chain R: N.106, E.109, D.135 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:E.109, R:E.109, R:D.135, R:D.135 MG.59: 3 residues within 4Å: Chain V: N.106, E.109, D.135 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.109, V:E.109, V:D.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numoto, N. et al., The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-06-04

Peptides

A1 globin chain of giant V2 hemoglobin: AEIMQU
A2 globin chain of giant V2 hemoglobin: BFJNRV
B2 globin chain of giant V2 hemoglobin: CGKOSW
B1 globin chain of giant V2 hemoglobin: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

I
A

M
E

Q
A

U
E

B
B

F
F

J
B

N
F

R
B

V
F

C
C

G
G

K
C

O
G

S
C

W
G

D
D

H
H

L
D

P
H

T
D

X
H

A1 globin chain of giant V2 hemoglobin

A2 globin chain of giant V2 hemoglobin

B2 globin chain of giant V2 hemoglobin

B1 globin chain of giant V2 hemoglobin

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