SMTL ID : 3wd9.2 (1 other biounit)

Crystal structure of phosphodiesterase 4B in complex with compound 10f

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x QPC: 4-[(4-{2-[(2,2-dimethylpropyl)amino]-2-oxoethyl}phenyl)amino]-2-phenylpyrimidine-5-carboxamide(Non-covalent)

QPC.1: 19 residues within 4Å: Chain A: Y.82, H.83, H.127, G.129, V.130, S.131, M.196, L.242, N.244, I.259, E.262, F.263, Q.266, S.291, Q.292, F.295, L.351, M.352, F.355 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.262, A:F.263, A:Q.266, A:F.295, A:F.295, A:L.351, A:F.355 Hydrogen bonds: A:N.244, A:Q.292 Water bridges: A:Y.82, A:Y.82 pi-Stacking: A:F.295

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.87, H.123, D.124, D.241 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.87, A:H.123, A:D.124, A:D.241, H2O.1, H2O.1

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: D.124, E.153 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.124, H2O.1, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto, T. et al., Synthesis and biological evaluation of 5-carbamoyl-2-phenylpyrimidine derivatives as novel and potent PDE4 inhibitors. Bioorg.Med.Chem. (2013)

Release Date

2013-10-23

Peptides

cAMP-specific 3',5'-cyclic phosphodiesterase 4B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

cAMP-specific 3',5'-cyclic phosphodiesterase 4B

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