SMTL ID : 3wdd.1

Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x WRP- WLU- ALA- WPA- VAL- MLE- WVL: Cyclomarin A(Non-covalent)

WRP-WLU-ALA-WPA-VAL-MLE-WVL.1: 14 residues within 4Å: Chain A: M.1, Y.2, V.13, V.14, Q.17, I.28, H.77, I.78, P.79, F.80, K.85, L.88, E.89, L.92 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:M.1, A:Y.2, A:Y.2, A:V.14, A:Q.17, A:I.28, A:H.77, A:P.79, A:L.88, A:E.89, A:L.92 Hydrogen bonds: A:M.1, A:Y.2, A:F.80, A:K.85, A:E.89, A:E.89 Water bridges: A:M.1 pi-Stacking: A:Y.2

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: G.29, T.30, E.31, T.81, R.83, A.84, G.118, V.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.30, A:T.81, A:A.84, A:V.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vasudevan, D. et al., Structural basis of mycobacterial inhibition by cyclomarin A. J.Biol.Chem. (2013)

Release Date

2013-09-18

Peptides

Probable ATP-dependent Clp protease ATP-binding subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ATP-dependent Clp protease ATP-binding subunit