SMTL ID : 3wdp.2 (1 other biounit)

Structural analysis of a beta-glucosidase mutant derived from a hyperthermophilic tetrameric structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: Q.18, H.151, W.152, N.207, E.208, N.306, E.373, W.411, E.418, W.419 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.18, A:H.151, A:N.207, A:E.208, A:N.306, A:E.418 GOL.2: 4 residues within 4Å: Chain A: R.132, K.133, S.136, L.199 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.132, A:S.136 Water bridges: A:E.129, A:E.129, A:S.136 GOL.3: 6 residues within 4Å: Chain A: E.208, V.211, A.265, Y.308, W.347 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.306 GOL.7: 10 residues within 4Å: Chain B: Q.18, H.151, W.152, N.207, E.208, N.306, E.373, W.411, E.418, W.419 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.18, B:H.151, B:N.207, B:E.208, B:N.306, B:E.418 Water bridges: B:N.416

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: F.92, K.95, K.180, V.183, E.184, K.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.184 Salt bridges: A:K.95, A:K.180, A:K.187 PO4.5: 4 residues within 4Å: Chain A: Y.213, N.214, E.235, K.238 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.214, A:E.235 Water bridges: A:Y.213, A:N.214, A:K.238 Salt bridges: A:K.238 PO4.6: 4 residues within 4Å: Chain A: D.270, P.271, R.310, Y.350 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.270 Salt bridges: A:R.310 PO4.8: 6 residues within 4Å: Chain B: F.92, K.95, K.180, V.183, E.184, K.187 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:F.92, B:F.92, B:E.184 Water bridges: B:K.180, B:K.180 Salt bridges: B:K.95, B:K.180, B:K.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakabayashi, M. et al., Structural analysis of beta-glucosidase mutants derived from a hyperthermophilic tetrameric structure. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-03-12

Peptides

Beta-glucosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
S

Beta-glucosidase

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