SMTL ID : 3we4.1

Crystal structure of S6K1 kinase domain in complex with a pyrimidine derivative PF-4708671 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.170, H.175, H.181, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.170, A:H.175, A:H.181, A:C.184

1 x 5FI: 2-{[4-(5-ethylpyrimidin-4-yl)piperazin-1-yl]methyl}-5-(trifluoromethyl)-1H-benzimidazole(Non-covalent)

5FI.2: 18 residues within 4Å: Chain A: L.27, G.28, K.29, G.30, Y.32, G.33, K.34, V.35, A.51, K.53, L.55, L.102, E.103, Y.104, L.105, M.155, L.169, K.171 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.35, A:A.51, A:L.102, A:K.171 Hydrogen bonds: A:L.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niwa, H. et al., Crystal structures of the S6K1 kinase domain in complexes with inhibitors. J.Struct.Funct.Genom. (2014)

Release Date

2014-08-06

Peptides

Ribosomal protein S6 kinase beta-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosomal protein S6 kinase beta-1

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