- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LYS: LYSINE(Covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: E.98, F.99, R.122
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.99
- Water bridges: A:E.98
- Salt bridges: A:R.122
SO4.3: 2 residues within 4Å:- Chain A: H.286, Y.287
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.287
- Salt bridges: A:H.286
SO4.4: 2 residues within 4Å:- Chain A: G.109, R.110
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.110
- Water bridges: A:D.111, A:D.111
- Salt bridges: A:R.110
SO4.12: 3 residues within 4Å:- Chain B: G.285, H.286, Y.287
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.287
- Salt bridges: B:H.286
SO4.13: 2 residues within 4Å:- Chain B: G.109, R.110
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.110
- Water bridges: B:D.111
- Salt bridges: B:R.110
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: L.106, L.107, N.459, P.460, V.461, C.490
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.459
EDO.6: 3 residues within 4Å:- Chain A: Y.577, W.587, N.611
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.577, A:Y.577
- Water bridges: A:N.611
EDO.7: 3 residues within 4Å:- Chain A: N.21, D.51, E.52
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.21, A:E.52
- Water bridges: A:D.51, A:A.53, A:R.57
EDO.8: 4 residues within 4Å:- Chain A: I.29, V.256, P.301, R.305
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.305
EDO.9: 5 residues within 4Å:- Chain A: R.271, L.349, K.352, A.407
- Ligands: EDO.10
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.352
- Water bridges: A:R.271, A:R.271
EDO.10: 4 residues within 4Å:- Chain A: R.271, Y.280, G.285
- Ligands: EDO.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.271, A:G.285
EDO.15: 2 residues within 4Å:- Chain B: N.515, Y.619
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.515, B:N.515
EDO.16: 6 residues within 4Å:- Chain B: L.106, L.107, N.459, P.460, V.461, C.490
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.459
EDO.17: 3 residues within 4Å:- Chain B: N.21, D.51, E.52
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.21, B:N.21, B:E.52
- Water bridges: B:D.51, B:D.51, B:R.57
EDO.18: 3 residues within 4Å:- Chain B: S.432, D.433, M.434
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.433, B:D.433, B:M.434
EDO.19: 4 residues within 4Å:- Chain B: I.29, V.256, P.301, R.305
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.305
EDO.20: 4 residues within 4Å:- Chain B: R.329, G.331, F.421, A.423
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.331, B:F.421
- 1 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Okazaki, S. et al., X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea. J.Biochem. (2013)
- Release Date
- 2013-09-04
- Peptides
- L-lysine 6-oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LYS: LYSINE(Covalent)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Okazaki, S. et al., X-Ray crystallographic evidence for the presence of the cysteine tryptophylquinone cofactor in L-lysine {varepsilon}-oxidase from Marinomonas mediterranea. J.Biochem. (2013)
- Release Date
- 2013-09-04
- Peptides
- L-lysine 6-oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B