SMTL ID : 3wf7.1

Crystal structure of S6K1 kinase domain in complex with a purine derivative 1-(9H-purin-6-yl)-N-[3-(trifluoromethyl)phenyl]piperidine-4-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.170, H.175, H.181, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.170, A:H.175, A:H.181, A:C.184

1 x FS9: 1-(9H-PURIN-6-YL)-N-[3-(TRIFLUOROMETHYL)PHENYL]PIPERIDINE-4-CARBOXAMIDE(Non-covalent)

FS9.2: 17 residues within 4Å: Chain A: L.27, K.29, G.30, Y.32, G.33, K.34, V.35, A.51, K.53, L.55, V.86, L.102, E.103, Y.104, L.105, M.155, K.171 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.35, A:K.171 Hydrogen bonds: A:K.53, A:E.103, A:L.105

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: Y.104, S.106, H.158 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.104, A:S.106, A:S.106 Water bridges: A:I.49, A:I.49, A:E.103, A:Y.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niwa, H. et al., Crystal structures of the S6K1 kinase domain in complexes with inhibitors. J.Struct.Funct.Genom. (2014)

Release Date

2014-08-06

Peptides

Ribosomal protein S6 kinase beta-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosomal protein S6 kinase beta-1

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