SMTL ID : 3wfz.1 (1 other biounit)

Crystal structure of Galacto-N-Biose/Lacto-N-Biose I Phosphorylase C236Y Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.1: 9 residues within 4Å: Chain A: V.162, Y.165, F.218, W.233, F.310, L.311, G.312, D.313, S.336 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.233, A:F.310 Hydrogen bonds: A:D.313, B:S.612 Water bridges: A:E.228, A:S.336, A:S.336, A:H.460, A:H.460, A:H.460, B:S.612 NDG.2: 9 residues within 4Å: Chain A: S.612 Chain B: Y.165, F.218, W.233, F.310, L.311, G.312, D.313, H.460 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.310 Hydrogen bonds: B:D.313, A:S.612 Water bridges: B:N.166, B:N.166, B:E.228, A:S.612

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koyama, Y. et al., Directed evolution to enhance thermostability of galacto-N-biose/lacto-N-biose I phosphorylase. Protein Eng.Des.Sel. (2013)

Release Date

2013-10-09

Peptides

Lacto-N-biose phosphorylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lacto-N-biose phosphorylase

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