SMTL ID : 3wgp.1

Crystal Structure Analysis of Vitamin D receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ED9: (1R,2R,3R,5Z,7E,14beta,17alpha)-2-(3-hydroxypropoxy)-9,10-secocholesta-5,7,10-triene-1,3,25-triol(Non-covalent)

ED9.1: 25 residues within 4Å: Chain A: T.23, Y.24, D.25, Y.28, L.57, L.60, L.63, V.64, Y.66, S.67, K.70, I.101, R.104, S.105, S.108, W.116, C.118, Y.125, V.130, H.135, L.139, L.143, H.227, Y.231, V.248 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.57, A:L.60, A:L.63, A:L.63, A:V.64, A:Y.66, A:W.116, A:Y.125, A:V.130, A:L.139, A:L.143, A:V.248 Hydrogen bonds: A:T.23, A:Y.24, A:S.67, A:R.104, A:R.104, A:S.108, A:H.135 Water bridges: A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, S. et al., Crystal Structure Analysis of Vitamin D receptor. to be published

Release Date

2014-08-27

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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