SMTL ID : 3wi3.2 (2 other biounits)

Crystal Structure of the Sld3/Treslin domain from yeast Sld3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.14, Y.32, S.36, N.37, R.40 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.14, A:S.36 Water bridges: A:K.18 Salt bridges: A:K.18, A:R.40

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: D.21, A.22, S.25, T.28, Y.32 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.25 Water bridges: A:S.25, A:T.28 EDO.3: 6 residues within 4Å: Chain A: K.18, D.21, A.22, Y.32, N.37 Ligands: EDO.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.18, A:K.18, A:K.18, A:D.21, A:A.22, A:Y.32, A:N.37 EDO.4: 4 residues within 4Å: Chain A: K.35, P.254, Y.255, K.258 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.35, A:Y.255 Water bridges: A:K.259 EDO.5: 7 residues within 4Å: Chain A: V.119, S.122, R.123, H.231, I.235, A.242 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.122, A:K.126 EDO.6: 7 residues within 4Å: Chain A: R.75, H.76, R.79, L.80, L.81, C.117, K.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79, A:L.81, A:C.117, A:K.121 EDO.7: 8 residues within 4Å: Chain A: I.26, H.27, R.123, H.231, N.234, A.242 Ligands: EDO.5, EDO.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.26, A:R.123, A:H.231, A:N.234 EDO.8: 3 residues within 4Å: Chain A: K.121, R.203, L.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.121, A:R.203, A:L.207 Water bridges: A:K.121 EDO.9: 2 residues within 4Å: Chain A: H.27 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itou, H. et al., Crystal structure of the homology domain of the eukaryotic DNA replication proteins sld3/treslin. Structure (2014)

Release Date

2014-08-20

Peptides

DNA replication regulator SLD3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA replication regulator SLD3

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