SMTL ID : 3wi6.1

Crystal structure of MAPKAP Kinase-2 (MK2) in complex with non-selective inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-12-mer

Ligands

12 x YRZ: N-[(3S)-piperidin-3-yl]-7,8-dihydro-6H-pyrazolo[1,5-a]pyrrolo[3,2-e]pyrimidin-5-amine(Non-covalent)

YRZ.1: 12 residues within 4Å: Chain A: L.30, L.32, G.33, A.51, V.78, M.98, E.99, L.101, E.150, N.151, L.153, D.167 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.153 Hydrogen bonds: A:L.101, A:E.150 YRZ.2: 13 residues within 4Å: Chain B: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.153 Hydrogen bonds: B:L.101, B:E.150 YRZ.3: 13 residues within 4Å: Chain C: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.30, C:L.153 Hydrogen bonds: C:L.101, C:E.150 YRZ.4: 12 residues within 4Å: Chain D: L.30, L.32, G.33, A.51, V.78, E.99, C.100, L.101, E.150, N.151, L.153, D.167 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.30, D:L.153 Hydrogen bonds: D:L.101, D:E.150, D:T.166 YRZ.5: 13 residues within 4Å: Chain E: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:L.30, E:L.153 Hydrogen bonds: E:L.101, E:E.150 YRZ.6: 13 residues within 4Å: Chain F: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:L.153 Hydrogen bonds: F:L.101, F:E.150, F:T.166 YRZ.7: 12 residues within 4Å: Chain G: L.30, L.32, G.33, A.51, V.78, M.98, E.99, L.101, E.150, N.151, L.153, D.167 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:L.153 Hydrogen bonds: G:L.101, G:E.150 YRZ.8: 13 residues within 4Å: Chain H: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:L.153 Hydrogen bonds: H:L.101, H:E.150 YRZ.9: 13 residues within 4Å: Chain I: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 4 PLIP interactions: 4 interactions with chain I Hydrophobic interactions: I:L.30, I:L.153 Hydrogen bonds: I:L.101, I:E.150 YRZ.10: 12 residues within 4Å: Chain J: L.30, L.32, G.33, A.51, V.78, E.99, C.100, L.101, E.150, N.151, L.153, D.167 5 PLIP interactions: 5 interactions with chain J Hydrophobic interactions: J:L.30, J:L.153 Hydrogen bonds: J:L.101, J:E.150, J:T.166 YRZ.11: 13 residues within 4Å: Chain K: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:L.30, K:L.153 Hydrogen bonds: K:L.101, K:E.150 YRZ.12: 13 residues within 4Å: Chain L: L.30, L.32, G.33, A.51, V.78, M.98, E.99, C.100, L.101, E.150, N.151, L.153, D.167 4 PLIP interactions: 4 interactions with chain L Hydrophobic interactions: L:L.153 Hydrogen bonds: L:L.101, L:E.150, L:T.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujino, A. et al., Structure of the beta-form of human MK2 in complex with the non-selective kinase inhibitor TEI-L03090. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-12-18

Peptides

MAP kinase-activated protein kinase 2: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

MAP kinase-activated protein kinase 2

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