- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 6 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
PGO.3: 7 residues within 4Å:- Chain A: R.95, A.120, L.125, H.126, R.130, I.133, Y.134
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:A.120, A:L.125
- Hydrogen bonds: A:R.130, A:Y.134, A:Y.134
PGO.8: 8 residues within 4Å:- Chain B: R.95, A.120, L.125, H.126, R.130, I.133, Y.134, D.135
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:A.120, B:L.125
- Hydrogen bonds: B:R.130, B:Y.134, B:Y.134
PGO.9: 7 residues within 4Å:- Chain B: F.88, V.143, D.145, P.146, D.147, L.148, G.149
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.88
- Hydrogen bonds: B:P.146, B:L.148, B:G.149
PGO.15: 7 residues within 4Å:- Chain C: R.95, L.125, H.126, R.130, I.133, Y.134, D.135
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.125
- Hydrogen bonds: C:R.130, C:R.130, C:Y.134, C:Y.134
PGO.20: 8 residues within 4Å:- Chain D: R.95, A.120, L.125, H.126, F.128, R.130, Y.134, D.135
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:A.120, D:F.128
- Hydrogen bonds: D:R.130, D:Y.134
- Water bridges: D:R.130
PGO.21: 6 residues within 4Å:- Chain D: F.88, V.143, D.145, P.146, L.148, G.149
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:F.88, D:V.143
- Hydrogen bonds: D:P.146, D:L.148, D:G.149
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.4: 9 residues within 4Å:- Chain A: I.104, R.106, E.166, V.170, I.310
- Chain B: Q.178
- Chain C: K.173, R.174, S.175
6 PLIP interactions:3 interactions with chain A, 2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: A:R.106, A:E.166, A:E.166, B:Q.178
- Water bridges: B:K.173, C:I.176
1PE.5: 10 residues within 4Å:- Chain A: Y.82, I.137, L.140, V.141, K.142, N.144, K.309, V.313
- Chain B: D.181, I.185
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.142, A:K.309
1PE.10: 8 residues within 4Å:- Chain A: Q.178
- Chain B: R.106, E.166, H.311, Q.314
- Chain D: K.173, R.174, S.175
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.106, B:Q.314, B:Q.314
1PE.11: 10 residues within 4Å:- Chain A: I.185
- Chain B: Y.82, I.137, Q.138, L.140, V.141, K.142, N.144, K.309, V.313
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.30, B:K.142, B:N.144, B:K.309
1PE.12: 11 residues within 4Å:- Chain B: K.173, R.174
- Chain C: K.173, I.176, Q.178, N.179, S.182
- Chain D: I.104, R.106, E.166, V.170
3 PLIP interactions:1 interactions with chain D, 1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: D:I.104, C:K.173
- Water bridges: B:I.176
1PE.16: 10 residues within 4Å:- Chain A: K.173, R.174
- Chain C: I.104, R.106, K.173
- Chain D: K.173, I.176, Q.178, N.179, S.182
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:I.104, C:K.173, C:K.173, D:S.182
- Water bridges: C:R.106
1PE.17: 12 residues within 4Å:- Chain C: Y.82, I.137, Q.138, L.140, V.141, K.142, N.144, K.309, V.313
- Chain D: N.179, D.181, I.185
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:Y.82, C:Y.82, C:K.142, C:K.309
- Water bridges: D:K.206, D:G.209
1PE.22: 13 residues within 4Å:- Chain C: N.179, D.181, I.185
- Chain D: Y.82, I.137, L.140, V.141, K.142, N.144, K.309, V.313, L.316, D.317
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.142, D:K.309, D:D.317
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanoh, Y. et al., Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-05-14
- Peptides
- Glucose 1-dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 6 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kanoh, Y. et al., Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-05-14
- Peptides
- Glucose 1-dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D