SMTL ID : 3wif.1

Crystal structure of anti-prostaglandin E2 Fab fragment 9Cl-PGF2beta complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ON5: (Z)-7-[(1R,2R,3R,5R)-5-chloranyl-3-oxidanyl-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid(Non-covalent)

ON5.1: 15 residues within 4Å: Chain A: F.33, H.35, V.37, W.50, H.99, Y.101, D.102, P.105, W.107 Chain B: H.31, Y.37, E.39, L.94, G.96, L.101 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:L.94, B:L.101, A:F.33, A:V.37, A:W.50, A:Y.101, A:P.105, A:W.107 Hydrogen bonds: B:E.39, A:D.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugahara, M. et al., Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2. To be Published

Release Date

2014-09-17

Peptides

mAb Fab H fragment: A
mAb Fab L fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mAb Fab H fragment

mAb Fab L fragment

Related Entries With Identical Sequence