SMTL ID : 3wlq.1

Crystal Structure Analysis of Plant Exohydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: E.224, N.225, N.226, S.259, K.264 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.226 Hydrogen bonds: A:K.264 Water bridges: A:N.225, A:N.225, A:N.225, A:N.225, A:T.298 NAG.2: 3 residues within 4Å: Chain A: D.499, N.500, N.502 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.499 Water bridges: A:L.501, A:N.502, A:T.504 NAG.3: 1 residues within 4Å: Chain A: N.604 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.604

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: N.223, W.438, Q.439, T.494, E.495, T.496, K.497 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.224, A:Q.439, A:T.496, A:T.496, A:K.497 GOL.5: 3 residues within 4Å: Chain A: T.298, P.299, A.300 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.298, A:A.300 GOL.6: 9 residues within 4Å: Chain A: L.58, D.99, F.148, K.210, M.254, D.289, M.320, W.434 Ligands: GOL.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.210, A:D.289 GOL.7: 2 residues within 4Å: Chain A: K.456, A.457 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.453, A:K.456 GOL.8: 3 residues within 4Å: Chain A: P.342, M.343, S.344 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.343, A:S.344, A:S.344 Water bridges: A:S.344 GOL.9: 2 residues within 4Å: Chain A: S.330, I.331 No protein-ligand interaction detected (PLIP) GOL.10: 3 residues within 4Å: Chain A: E.387, R.390, K.391 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.390, A:R.390 Water bridges: A:R.390, A:K.391 GOL.11: 6 residues within 4Å: Chain A: G.60, G.61, W.290, W.434, W.438 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Streltsov, V.A. et al., Discovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site. Nat Commun (2019)

Release Date

2015-03-25

Peptides

Beta-D-glucan exohydrolase isoenzyme ExoI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-D-glucan exohydrolase isoenzyme ExoI

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