SMTL ID : 3wmt.1

Crystal structure of feruloyl esterase B from Aspergillus oryzae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.31 NAG.2: 9 residues within 4Å: Chain A: H.38, N.77, Q.85, I.86, F.87, N.131, G.133, H.134, F.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.87, A:N.131, A:G.133 NAG.3: 8 residues within 4Å: Chain A: N.213, N.216, S.312, F.313, L.314, A.364, N.367, W.377 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.377 Hydrogen bonds: A:N.213, A:N.216 Water bridges: A:N.367 NAG.4: 6 residues within 4Å: Chain A: L.277, L.278, N.280, Q.283, C.290 Chain B: S.423 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.280, A:Q.283, B:S.423 Water bridges: A:N.280 NAG.5: 2 residues within 4Å: Chain A: Q.144, N.349 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.144 Hydrogen bonds: A:Q.144 Water bridges: A:T.146 NAG.7: 9 residues within 4Å: Chain B: H.38, N.77, Q.85, I.86, F.87, N.131, G.133, H.134, F.135 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.87, B:F.135 Hydrogen bonds: B:F.87, B:N.131, B:G.133 Water bridges: B:H.38, B:Q.85 NAG.8: 6 residues within 4Å: Chain B: N.213, N.216, F.313, L.314, N.367, W.377 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.377 Hydrogen bonds: B:N.213, B:N.216 NAG.9: 6 residues within 4Å: Chain A: S.423 Chain B: L.277, L.278, N.280, Q.283, C.290 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.280, B:N.280, B:Q.283, A:S.423

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 5 residues within 4Å: Chain A: D.254, D.257, A.259, D.261, I.263 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.254, A:D.257, A:A.259, A:I.263, H2O.1 CA.10: 5 residues within 4Å: Chain B: D.254, D.257, A.259, D.261, I.263 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.254, B:D.257, B:A.259, B:I.263, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, K. et al., Crystal structure of a feruloyl esterase belonging to the tannase family: a disulfide bond near a catalytic triad. Proteins (2014)

Release Date

2014-08-06

Peptides

Probable feruloyl esterase B-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable feruloyl esterase B-1