SMTL ID : 3wmu.1

The structure of an anti-cancer lectin mytilec apo-form from the mussel Mytilus galloprovincialis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: H.19, P.20, K.21, G.22, G.23, V.34, H.36, H.40, E.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.20, A:G.22, A:H.40 Water bridges: A:G.22 GOL.2: 9 residues within 4Å: Chain A: E.78, H.111, P.112, K.113, G.114, G.115, V.126, H.128, H.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.112, A:G.114, A:H.132 Water bridges: A:E.78 GOL.3: 9 residues within 4Å: Chain A: D.30, H.67, P.68, L.69, G.70, G.71, V.82, H.84, H.88 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.67, A:P.68, A:G.70, A:H.88 Water bridges: A:D.86 GOL.4: 9 residues within 4Å: Chain B: E.78, H.111, P.112, K.113, G.114, G.115, V.126, H.128, H.132 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.111, B:P.112, B:G.114, B:G.115, B:H.132 Water bridges: B:E.78, B:D.130 GOL.5: 10 residues within 4Å: Chain B: H.19, P.20, K.21, G.22, G.23, V.34, H.36, D.38, H.40, E.122 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.19, B:P.20, B:G.22, B:H.40 GOL.6: 9 residues within 4Å: Chain B: D.30, H.67, L.69, G.70, G.71, V.82, H.84, D.86, H.88 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.70, B:D.86, B:H.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terada, D. et al., Crystal structure of MytiLec, a galactose-binding lectin from the mussel Mytilus galloprovincialis with cytotoxicity against certain cancer cell types. Sci Rep (2016)

Release Date

2014-12-03

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lectin

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