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SMTL ID : 3wmx.1
(1 other biounit)
GalE-like L-Threonine dehydrogenase from Cupriavidus necator (holo form)
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
25 residues within 4Å:
Chain A:
G.32
,
N.34
,
G.35
,
Q.36
,
I.37
,
D.58
,
V.59
,
L.73
,
N.74
,
A.75
,
L.96
,
A.97
,
A.98
,
L.100
,
L.114
,
P.137
,
S.138
,
S.139
,
Y.164
,
K.168
,
Y.191
,
P.192
,
L.194
,
T.206
Ligands:
THR.2
18
PLIP interactions
:
17 interactions with chain A
,
1 Ligand-Ligand interactions
Hydrophobic interactions:
A:Y.191
,
T.2
Hydrogen bonds:
A:N.34
,
A:N.34
,
A:Q.36
,
A:Q.36
,
A:Q.36
,
A:I.37
,
A:N.74
,
A:A.75
,
A:L.96
,
A:A.98
,
A:K.168
,
A:L.194
,
A:T.206
Water bridges:
A:G.35
,
A:G.38
pi-Stacking:
A:Y.191
NAD.3:
27 residues within 4Å:
Chain B:
G.32
,
N.34
,
G.35
,
Q.36
,
I.37
,
D.58
,
V.59
,
V.60
,
L.73
,
N.74
,
A.75
,
L.96
,
A.97
,
A.98
,
L.100
,
L.114
,
P.137
,
S.138
,
S.139
,
Y.164
,
K.168
,
Y.191
,
P.192
,
G.193
,
L.194
,
G.202
,
T.206
16
PLIP interactions
:
16 interactions with chain B
Hydrophobic interactions:
B:Y.191
Hydrogen bonds:
B:N.34
,
B:Q.36
,
B:Q.36
,
B:Q.36
,
B:I.37
,
B:V.59
,
B:N.74
,
B:A.75
,
B:L.96
,
B:K.168
,
B:L.194
Water bridges:
B:G.32
,
B:G.35
,
B:G.38
pi-Stacking:
B:Y.191
1 x
THR
:
THREONINE
(Non-covalent)
THR.2:
9 residues within 4Å:
Chain A:
L.100
,
S.101
,
S.139
,
Y.164
,
G.204
,
T.205
,
T.206
,
W.300
Ligands:
NAD.1
6
PLIP interactions
:
6 interactions with chain A
Hydrophobic interactions:
A:Y.164
Hydrogen bonds:
A:S.101
,
A:T.205
,
A:T.206
,
A:T.206
,
A:T.206
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Nakano, S. et al., Binding of NAD+ and L-Threonine Induces Stepwise Structural and Flexibility Changes in Cupriavidus necator L-Threonine Dehydrogenase. J.Biol.Chem. (2014)
Release Date
2014-02-26
Peptides
NAD dependent epimerase/dehydratase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C
Export Alignment
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Secondary Structure
None
DSSP
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Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
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Size
Charged
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Proline
Ser/Thr
Cysteine
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Aromatic
No Colour
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NGL
PV
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NAD dependent epimerase/dehydratase
Related Entries With Identical Sequence
3wmw.1
|
3wmx.2
Cartoon
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Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme