- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO- LYS- NLE- ASP- ASN- DVA: PK(NLE)DN(DVA) peptide(Non-covalent)
- 4 x CD: CADMIUM ION(Non-covalent)
CD.3: 4 residues within 4Å:- Chain A: C.10, H.12, E.37
- Ligands: CD.4
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.10, A:H.12, A:E.37, A:E.37
CD.4: 5 residues within 4Å:- Chain A: C.10, E.37, D.61
- Ligands: CD.3, CL.5
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:C.10, A:E.37, A:D.61, H2O.1, H2O.1
CD.9: 4 residues within 4Å:- Chain B: C.10, H.12, E.37
- Ligands: CD.10
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.10, B:H.12, B:E.37, B:E.37
CD.10: 5 residues within 4Å:- Chain B: C.10, E.37, D.61
- Ligands: CD.9, CL.11
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:C.10, B:E.37, B:D.61, H2O.5, H2O.5
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 5 residues within 4Å:- Chain A: K.16, R.111, E.115, H.116, L.117
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.111, A:E.115, A:L.117
- Water bridges: A:K.16, A:K.16, A:K.118
- Salt bridges: A:K.16, A:H.116
SO4.7: 4 residues within 4Å:- Chain A: C.10, T.11, H.12, K.104
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.12
- Water bridges: A:C.10, A:N.100, A:N.100
- Salt bridges: A:K.104
SO4.8: 5 residues within 4Å:- Chain A: G.39, Q.40, G.68, A.69, T.70
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:Q.40, A:A.69, A:T.70, A:T.70
- Water bridges: A:G.39, A:G.39, A:G.39, A:G.68, A:G.68, A:V.71
SO4.12: 5 residues within 4Å:- Chain B: K.16, R.111, E.115, H.116, L.117
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:R.111, B:E.115, B:L.117
- Water bridges: B:K.16, B:K.16, B:K.16, B:K.16, B:K.118
- Salt bridges: B:K.16, B:H.116
SO4.13: 5 residues within 4Å:- Chain B: C.10, T.11, H.12, N.100, K.104
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:C.10, B:T.11, B:H.12, B:N.100
- Salt bridges: B:K.104
SO4.14: 5 residues within 4Å:- Chain B: G.39, Q.40, G.68, A.69, T.70
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:Q.40, B:A.69, B:T.70
- Water bridges: B:G.39, B:G.68, B:G.68, B:V.71
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Northfield, S.E. et al., Hexapeptide mimetics of LEDGF in complex with HIV-1 integrase. to be published
- Release Date
- 2013-12-25
- Peptides
- Gag-Pol polyprotein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PRO- LYS- NLE- ASP- ASN- DVA: PK(NLE)DN(DVA) peptide(Non-covalent)
- 4 x CD: CADMIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Northfield, S.E. et al., Hexapeptide mimetics of LEDGF in complex with HIV-1 integrase. to be published
- Release Date
- 2013-12-25
- Peptides
- Gag-Pol polyprotein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B