SMTL ID : 3wo5.1

Crystal structure of S147Q of Rv2613c from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-tetramer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: N.154, G.160, G.161, Q.162, L.163, A.164, H.168, H.170 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.154, A:Q.162, A:L.163, A:L.163 Water bridges: A:N.154, A:H.168 Salt bridges: A:H.168, A:H.170 PO4.3: 6 residues within 4Å: Chain B: N.154, G.160, L.163, H.168, H.170 Chain C: Q.38 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.154, B:G.160 Water bridges: B:N.154 Salt bridges: B:H.168, B:H.170 PO4.4: 5 residues within 4Å: Chain B: R.89, K.135, W.206, K.211, L.212 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.212, B:L.212 Water bridges: B:K.135, B:K.135 Salt bridges: B:K.135, B:K.211 PO4.7: 8 residues within 4Å: Chain C: N.154, G.160, G.161, Q.162, L.163, A.164, H.168, H.170 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:N.154, C:Q.162, C:L.163, C:L.163 Water bridges: C:N.154, C:H.168 Salt bridges: C:H.168, C:H.170 PO4.9: 6 residues within 4Å: Chain A: Q.38 Chain D: N.154, G.160, L.163, H.168, H.170 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.154, D:G.160 Water bridges: D:N.154 Salt bridges: D:H.168, D:H.170 PO4.10: 5 residues within 4Å: Chain D: R.89, K.135, W.206, K.211, L.212 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:L.212, D:L.212 Water bridges: D:K.135, D:K.135 Salt bridges: D:K.135, D:K.211

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 8 residues within 4Å: Chain A: I.76, L.79, E.83, G.84, L.85, L.97, L.99, M.108 No protein-ligand interaction detected (PLIP) PG4.5: 7 residues within 4Å: Chain B: P.104, W.175, G.176, G.177, Q.193 Chain C: T.157, Q.162 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.157 PG4.8: 8 residues within 4Å: Chain C: I.76, L.79, E.83, G.84, L.85, L.97, L.99, M.108 No protein-ligand interaction detected (PLIP) PG4.11: 7 residues within 4Å: Chain A: T.157, Q.162 Chain D: P.104, W.175, G.176, G.177, Q.193 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.157

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 2 residues within 4Å: Chain B: P.77, Y.112 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.89 GOL.12: 2 residues within 4Å: Chain D: P.77, Y.112 1 PLIP interactions: 1 interactions with chain D Water bridges: D:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mori, S. et al., Role of Ser-147 and Ala-149 in catalytic activity of diadenosine tetraphosphate phosphorylase from Mycobacterium tuberculosis H37Rv. To be Published

Release Date

2014-12-24

Peptides

AP-4-A phosphorylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

AP-4-A phosphorylase