SMTL ID : 3wo6.1

Crystal structure of YidC from Bacillus halodurans (form I)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: H.138 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.138, H2O.1

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 2 residues within 4Å: Chain A: I.158, Y.161 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.158, A:Y.161, A:Y.161 OLC.3: 2 residues within 4Å: Chain A: L.141, W.142 No protein-ligand interaction detected (PLIP) OLC.4: 4 residues within 4Å: Chain A: F.17, P.20, M.21, I.117 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.117 OLC.5: 5 residues within 4Å: Chain A: E.10, W.13, N.14, F.127, R.131 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.10, A:W.13, A:F.127, A:F.127 Hydrogen bonds: A:N.14 Salt bridges: A:R.131 OLC.6: 2 residues within 4Å: Chain A: E.8, S.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.8, A:E.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumazaki, K. et al., Structural basis of Sec-independent membrane protein insertion by YidC. Nature (2014)

Release Date

2014-04-23

Peptides

Membrane protein insertase YidC 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Membrane protein insertase YidC 2