- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x VAL- TYR- ILE- HIS- PRO: Angiotensin II(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: T.574, F.576, I.615
- Chain B: D.569, G.570, M.571
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:I.615, B:D.569, B:G.570, B:M.571
GOL.4: 5 residues within 4Å:- Chain A: D.35, K.227, H.228, W.229, K.231
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.228, A:H.228, A:W.229, A:W.229
GOL.5: 4 residues within 4Å:- Chain A: G.44, F.101, R.151, N.166
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.151, A:R.151, A:N.166
- Water bridges: A:G.44
GOL.6: 7 residues within 4Å:- Chain A: Y.65, K.184, D.188, A.298, M.301, A.302, N.305
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Y.65, A:K.184, A:A.298, A:M.301, A:A.302, A:N.305
- Water bridges: A:N.306
GOL.7: 6 residues within 4Å:- Chain A: C.63, A.64, G.66, A.67, A.98, Y.204
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:G.66, A:A.67
- Water bridges: A:C.63, A:R.99, A:Y.204, A:Q.419, A:Q.419, A:R.423
GOL.8: 5 residues within 4Å:- Chain A: R.389, M.508, L.511, E.515, R.518
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.389, A:E.515, A:R.518
- Water bridges: A:N.376, A:L.511, A:R.518
GOL.9: 3 residues within 4Å:- Chain A: N.77, Q.294, V.295
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.77, A:N.77, A:Q.294, A:Q.294
GOL.10: 7 residues within 4Å:- Chain A: A.233, D.234, Q.235, P.236, G.609, L.610, R.675
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.234, A:G.609
- Water bridges: A:Q.235, A:R.675, A:R.678
GOL.13: 5 residues within 4Å:- Chain A: D.569, G.570
- Chain B: T.574, F.576, I.615
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:T.574, B:I.615, A:D.569, A:G.570, A:M.571
GOL.14: 7 residues within 4Å:- Chain B: T.33, L.103, D.104, F.148, L.167, Y.224, K.227
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.224
- Water bridges: B:Y.224
GOL.15: 5 residues within 4Å:- Chain B: D.35, K.227, H.228, W.229, K.231
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.227, B:H.228, B:W.229, B:W.229
GOL.16: 4 residues within 4Å:- Chain B: G.44, F.101, R.151, N.166
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.151, B:N.166
- Water bridges: B:G.45, B:Y.153
- 4 x ZN: ZINC ION(Non-covalent)
ZN.11: 2 residues within 4Å:- Chain A: K.23, H.641
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.641, H2O.21
ZN.12: 2 residues within 4Å:- Chain A: E.481, K.484
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.481, H2O.21
ZN.17: 2 residues within 4Å:- Chain B: K.23, H.641
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.641
ZN.18: 2 residues within 4Å:- Chain B: E.481, K.484
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.481, B:E.481, H2O.37
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sakamoto, Y. et al., S46 peptidases are the first exopeptidases to be members of clan PA. SCI REP (2014)
- Release Date
- 2014-09-03
- Peptides
- dipeptidyl aminopeptidase BII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x VAL- TYR- ILE- HIS- PRO: Angiotensin II(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sakamoto, Y. et al., S46 peptidases are the first exopeptidases to be members of clan PA. SCI REP (2014)
- Release Date
- 2014-09-03
- Peptides
- dipeptidyl aminopeptidase BII: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B