- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: Y.187, H.361, C.363
- Ligands: 999.3
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.361, A:C.363, H2O.4, H2O.5, H2O.16
MG.4: 3 residues within 4Å:- Chain A: H.150
- Chain B: N.328
- Ligands: 999.3
No protein-ligand interaction detected (PLIP)MG.6: 5 residues within 4Å:- Chain B: K.53, Y.187, H.361, C.363
- Ligands: 999.8
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:H.361, B:C.363, H2O.3, H2O.17, H2O.18
MG.7: 3 residues within 4Å:- Chain A: N.328
- Chain B: H.150
- Ligands: 999.8
No protein-ligand interaction detected (PLIP)MG.9: 1 residues within 4Å:- Chain B: W.390
No protein-ligand interaction detected (PLIP)- 2 x 999: (3S)-3-hydroxy-D-aspartic acid(Non-covalent)
999.3: 11 residues within 4Å:- Chain A: K.53, H.150, R.151, H.182, Y.187, H.361
- Chain B: N.328, Q.329
- Ligands: PLP.1, MG.2, MG.4
14 PLIP interactions:9 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:K.53, A:R.151, B:Q.329
- Water bridges: A:H.150, A:H.150, A:R.151, A:R.151, B:N.328, B:N.328, B:N.328, B:H.331
- Salt bridges: A:K.53, A:R.151, A:H.361
999.8: 11 residues within 4Å:- Chain A: N.328, Q.329
- Chain B: K.53, H.150, R.151, H.182, Y.187, H.361
- Ligands: PLP.5, MG.6, MG.7
18 PLIP interactions:6 interactions with chain A, 12 interactions with chain B- Hydrogen bonds: A:Q.329, B:K.53, B:R.151, B:Y.187
- Water bridges: A:R.295, A:N.328, A:N.328, A:N.328, A:H.331, B:K.53, B:H.150, B:H.150, B:R.151, B:R.151
- Salt bridges: B:K.53, B:K.53, B:R.151, B:H.361
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matsumoto, Y. et al., Structural insights into the substrate stereospecificity of D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23: a useful enzyme for the synthesis of optically pure L-threo- and D-erythro-3-hydroxyaspartate. Appl.Microbiol.Biotechnol. (2015)
- Release Date
- 2015-01-28
- Peptides
- D-threo-3-hydroxyaspartate dehydratase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 999: (3S)-3-hydroxy-D-aspartic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matsumoto, Y. et al., Structural insights into the substrate stereospecificity of D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23: a useful enzyme for the synthesis of optically pure L-threo- and D-erythro-3-hydroxyaspartate. Appl.Microbiol.Biotechnol. (2015)
- Release Date
- 2015-01-28
- Peptides
- D-threo-3-hydroxyaspartate dehydratase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B