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SMTL ID : 3wry.1
(1 other biounit)
Crystal structure of helicase complex 2
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
hetero-1-1-mer
Ligands
2 x
AGS
:
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
(Non-covalent)
AGS.1:
18 residues within 4Å:
Chain A:
T.16
,
D.18
,
T.19
,
K.20
,
S.54
,
T.55
,
S.56
,
T.91
,
R.92
,
A.95
,
G.123
,
G.124
,
S.125
,
G.126
,
G.127
Chain B:
D.432
,
R.435
,
V.436
22
PLIP interactions
:
19 interactions with chain A
,
3 interactions with chain B
Hydrogen bonds:
A:D.18
,
A:T.19
,
A:T.55
,
A:T.55
,
A:S.56
,
A:R.92
,
A:R.92
,
A:G.124
,
A:G.126
,
A:G.127
,
B:D.432
,
B:R.435
Water bridges:
A:K.20
,
A:K.20
,
A:K.20
,
A:K.20
,
A:K.20
,
B:R.435
Salt bridges:
A:K.20
,
A:K.20
,
A:R.92
,
A:R.92
AGS.3:
17 residues within 4Å:
Chain B:
P.170
,
G.171
,
C.172
,
G.173
,
K.174
,
T.175
,
K.176
,
R.203
,
E.242
,
Q.271
,
L.302
,
R.303
,
G.379
,
T.381
,
R.411
,
T.413
Ligands:
MG.4
24
PLIP interactions
:
24 interactions with chain B
Hydrogen bonds:
B:G.171
,
B:C.172
,
B:G.173
,
B:K.174
,
B:K.174
,
B:T.175
,
B:K.176
,
B:R.303
,
B:R.303
,
B:G.379
,
B:T.381
,
B:R.411
,
B:R.411
Water bridges:
B:K.174
,
B:T.175
,
B:T.175
,
B:T.175
,
B:T.175
,
B:R.203
,
B:G.379
Salt bridges:
B:K.174
,
B:R.203
,
B:R.303
,
B:R.303
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
5 residues within 4Å:
Chain A:
M.85
,
G.86
Chain B:
N.313
,
Y.316
,
G.318
5
PLIP interactions
:
2 interactions with chain B
,
2 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
B:N.313
,
B:Y.316
,
A:M.85
,
A:G.86
,
H
2
O.7
MG.4:
3 residues within 4Å:
Chain B:
T.175
,
D.241
Ligands:
AGS.3
4
PLIP interactions
:
1 interactions with chain B
,
3 Ligand-Water interactions
Metal complexes:
B:T.175
,
H
2
O.10
,
H
2
O.11
,
H
2
O.16
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Ishibashi, K. et al., Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1. Proc.Natl.Acad.Sci.USA (2014)
Release Date
2014-08-13
Peptides
Tm-1 protein:
A
Replicase large subunit:
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C
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Secondary Structure
None
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Rainbow
2° Structure
Bfactor
Bfactor Range
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Tm-1 protein
Replicase large subunit
Related Entries With Identical Sequence
3wrx.1
|
3wrx.2
|
3wry.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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