SMTL ID : 3wsr.2 (1 other biounit)

Crystal structure of CLEC-2 in complex with O-glycosylated podoplanin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

hetero-1-1-mer

Ligands

1 x A2G- GAL- SIA: beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose

A2G-GAL-SIA.1: 11 residues within 4Å: Chain A: N.12, W.13, R.14, F.23, F.24, R.25, H.26, Y.36 Chain B: T.15, P.16, G.17 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.25, B:T.15, A:N.12, A:F.23, A:R.25, A:Y.36 Water bridges: B:E.10, B:E.10, A:F.23 Hydrophobic interactions: A:N.12, A:F.24 Salt bridges: A:R.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin. Structure (2014)

Release Date

2014-10-22

Peptides

C-type lectin domain family 1 member B: A
Peptide from Podoplanin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C-type lectin domain family 1 member B

Peptide from Podoplanin

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