SMTL ID : 3wsv.1

Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-unbound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: Q.89, T.90, D.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.90, A:D.93 Water bridges: A:T.90 GOL.2: 5 residues within 4Å: Chain A: L.163, Y.199, R.205 Chain D: I.277, E.285 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.163, A:Y.199, A:Y.199 GOL.3: 6 residues within 4Å: Chain B: T.149, T.152, T.153, R.156, L.255, P.256 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.156 GOL.4: 6 residues within 4Å: Chain B: Y.260, E.264, V.283, R.284, E.285, I.286 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.260, B:E.264, B:V.283, B:I.286 GOL.5: 7 residues within 4Å: Chain B: S.187, T.190, P.195 Chain C: S.187, H.188, T.190, P.195 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.187 Water bridges: B:G.193 GOL.6: 3 residues within 4Å: Chain C: Q.89, T.90, D.93 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.90, C:T.90 GOL.7: 2 residues within 4Å: Chain C: H.300, S.304 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.304 GOL.8: 6 residues within 4Å: Chain D: T.149, T.152, T.153, R.156, L.255, P.256 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.153 Water bridges: D:R.156, D:R.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matoba, Y. et al., An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A. Febs Open Bio (2014)

Release Date

2014-09-10

Peptides

L-lactate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-lactate dehydrogenase

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