- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
HEC.1: 29 residues within 4Å:- Chain A: K.13, C.14, C.17, H.18, T.28, G.29, P.30, L.35, T.40, G.41, F.46, Y.48, T.49, N.52, W.59, L.64, Y.67, L.68, T.78, K.79, M.80
- Chain B: I.81, A.83, I.85, L.94, L.98
- Ligands: PEG.4, PEG.5, PEG.10
23 PLIP interactions:4 interactions with chain B, 18 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: B:I.81, B:A.83, B:I.85, B:L.98, A:P.30, A:L.35, A:F.46, A:W.59, A:L.64, A:Y.67, A:L.68
- Hydrogen bonds: A:G.41, A:Q.42, A:T.49, A:N.52, A:N.52, A:T.78, A:T.78, A:K.79
- Water bridges: A:R.38, A:A.43
- Metal complexes: A:H.18, H2O.1
HEC.6: 29 residues within 4Å:- Chain A: I.81, A.83, I.85, L.94, L.98
- Chain B: K.13, C.14, C.17, H.18, T.28, G.29, P.30, L.35, T.40, G.41, F.46, Y.48, T.49, N.52, W.59, L.64, Y.67, L.68, T.78, K.79, M.80
- Ligands: PEG.5, PEG.9, PEG.10
23 PLIP interactions:18 interactions with chain B, 4 interactions with chain A, 1 Ligand-Water interactions,- Hydrophobic interactions: B:P.30, B:L.35, B:F.46, B:W.59, B:L.64, B:Y.67, B:L.68, A:I.81, A:A.83, A:I.85, A:L.98
- Hydrogen bonds: B:G.41, B:Q.42, B:Y.48, B:T.49, B:N.52, B:N.52, B:T.78, B:K.79
- Water bridges: B:R.38, B:A.43
- Metal complexes: B:H.18, H2O.4
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.2: 5 residues within 4Å:- Chain A: K.55, E.66, K.73, Y.74, P.76
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.55, A:K.55
PG4.7: 5 residues within 4Å:- Chain B: K.55, E.66, K.73, Y.74, P.76
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.55, B:K.55
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 5 residues within 4Å:- Chain A: K.7
- Chain B: Y.97, K.100, A.101, E.104
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:K.100, A:K.7
PO4.8: 5 residues within 4Å:- Chain A: Y.97, K.100, A.101, E.104
- Chain B: K.7
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Salt bridges: B:K.7, A:K.100
- Hydrogen bonds: A:Y.97
- Water bridges: A:E.104, A:E.104
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 5 residues within 4Å:- Chain A: T.47, Y.48, T.49, K.79
- Ligands: HEC.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.48, A:T.49
PEG.5: 8 residues within 4Å:- Chain A: Q.16, C.17, I.81
- Chain B: Q.16, T.28
- Ligands: HEC.1, HEC.6, PEG.10
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.16, B:T.28, A:Q.16
PEG.9: 5 residues within 4Å:- Chain B: T.47, Y.48, T.49, K.79
- Ligands: HEC.6
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.48, B:T.49
PEG.10: 8 residues within 4Å:- Chain A: Q.16, T.28
- Chain B: Q.16, C.17, I.81
- Ligands: HEC.1, PEG.5, HEC.6
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.16, B:Q.16
- Water bridges: A:T.28
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Deshpande, M.S. et al., Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer. Biochemistry (2014)
- Release Date
- 2014-07-16
- Peptides
- Cytochrome c: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEC: HEME C(Covalent)
- 2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Deshpande, M.S. et al., Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer. Biochemistry (2014)
- Release Date
- 2014-07-16
- Peptides
- Cytochrome c: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A