SMTL ID : 3wv6.1 (1 other biounit)

Crystal Structure of a protease-resistant mutant form of human galectin-9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 8 residues within 4Å: Chain A: H.61, N.63, R.65, V.73, N.75, W.82, E.85, R.87 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.65, A:R.65, A:R.87, A:R.65, A:N.75 Water bridges: A:Y.71, A:R.44, A:R.44, A:R.44

1 x GLC- GAL: beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GAL.2: 7 residues within 4Å: Chain A: H.208, N.210, R.212, N.221, W.228, E.231, R.233 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.212, A:N.221, A:R.212, A:R.212, A:R.233 Water bridges: A:N.210, A:N.210

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: D.100, C.102, H.161, H.293 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.100, A:D.100, A:C.102, A:H.161, A:H.293

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: D.100, N.115, G.186, T.187, S.246, T.292 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.115, A:G.186, A:S.246, A:T.292 EDO.5: 9 residues within 4Å: Chain A: N.34, G.35, P.98, F.99, G.186, S.246, F.247, S.248 Ligands: EDO.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.35, A:G.35, A:F.99, A:G.186, A:F.247 EDO.6: 3 residues within 4Å: Chain A: K.238, M.239, V.242 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.240 EDO.7: 4 residues within 4Å: Chain A: Q.193, S.194, G.287, D.288 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.194 EDO.8: 4 residues within 4Å: Chain A: T.51, H.129, R.130, D.132 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., X-ray structure of a protease-resistant mutant form of human galectin-9 having two carbohydrate recognition domains with a metal-binding site. Biochem.Biophys.Res.Commun. (2017)

Release Date

2015-05-20

Peptides

Galectin-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-9

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