SMTL ID : 3wvl.1 (1 other biounit)

Crystal structure of the football-shaped GroEL-GroES complex (GroEL: GroES2:ATP14) from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.79 Å

Oligo State

hetero-7-7-mer

Ligands

7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 24 residues within 4Å: Chain A: T.30, L.31, G.32, P.33, K.51, G.53, D.87, G.88, T.89, T.90, T.91, I.150, G.414, G.415, G.416, I.454, Y.478, N.479, A.480, A.481, I.493, D.495 Ligands: MG.2, K.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.32, A:G.53, A:G.88, A:T.89, A:T.90, A:T.90, A:T.91, A:T.91, A:G.415, A:G.416, A:N.479, A:A.480, A:A.481, A:D.495 Salt bridges: A:K.51 ATP.4: 25 residues within 4Å: Chain B: T.30, L.31, G.32, P.33, K.51, A.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, G.414, G.415, G.416, I.454, Y.478, N.479, A.480, A.481, I.493, D.495 Ligands: MG.5, K.6 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.32, B:G.53, B:G.88, B:T.89, B:T.90, B:T.91, B:T.91, B:T.91, B:G.415, B:G.416, B:N.479, B:A.480, B:A.481, B:D.495 Salt bridges: B:K.51 ATP.7: 25 residues within 4Å: Chain C: T.30, L.31, G.32, P.33, K.51, A.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, G.414, G.415, G.416, I.454, Y.478, N.479, A.480, A.481, I.493, D.495 Ligands: MG.8, K.9 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:T.30, C:G.32, C:G.53, C:G.88, C:G.88, C:T.89, C:T.90, C:T.91, C:G.415, C:G.416, C:N.479, C:A.480, C:D.495 ATP.10: 22 residues within 4Å: Chain D: T.30, L.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.414, G.415, G.416, Y.478, N.479, A.480, A.481, I.493, D.495 Ligands: MG.11, K.12 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:G.32, D:D.87, D:G.88, D:G.88, D:T.89, D:T.90, D:T.91, D:G.415, D:G.416, D:N.479, D:A.480, D:A.481, D:D.495 Salt bridges: D:K.51 ATP.13: 24 residues within 4Å: Chain E: T.30, L.31, G.32, P.33, K.51, A.52, G.53, D.87, G.88, T.89, T.90, T.91, N.153, G.414, G.415, I.454, Y.478, N.479, A.480, A.481, I.493, D.495 Ligands: MG.14, K.15 15 PLIP interactions: 15 interactions with chain E Hydrogen bonds: E:G.32, E:G.53, E:D.87, E:G.88, E:T.89, E:T.90, E:T.90, E:T.91, E:T.91, E:N.153, E:G.415, E:N.479, E:A.480, E:A.481, E:D.495 ATP.16: 24 residues within 4Å: Chain F: T.30, L.31, G.32, P.33, K.51, G.53, D.87, G.88, T.89, T.90, T.91, I.150, G.414, G.415, G.416, I.454, Y.478, N.479, A.480, A.481, I.493, D.495 Ligands: MG.17, K.18 15 PLIP interactions: 15 interactions with chain F Hydrogen bonds: F:G.32, F:G.53, F:G.88, F:T.89, F:T.90, F:T.90, F:T.91, F:T.91, F:G.415, F:G.416, F:N.479, F:A.480, F:A.481, F:D.495 Salt bridges: F:K.51 ATP.19: 24 residues within 4Å: Chain G: T.30, L.31, G.32, P.33, K.51, G.53, D.87, G.88, T.89, T.90, T.91, I.150, G.414, G.415, G.416, I.454, Y.478, N.479, A.480, A.481, I.493, D.495 Ligands: MG.20, K.21 16 PLIP interactions: 16 interactions with chain G Hydrogen bonds: G:G.32, G:G.53, G:G.88, G:T.89, G:T.90, G:T.90, G:T.91, G:T.91, G:T.91, G:G.415, G:G.416, G:N.479, G:A.480, G:A.481, G:D.495 Salt bridges: G:K.51

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.87, S.151 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.87 MG.5: 3 residues within 4Å: Chain B: D.87, S.151 Ligands: ATP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.87 MG.8: 4 residues within 4Å: Chain C: D.87, S.151 Ligands: ATP.7, K.9 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.87 MG.11: 3 residues within 4Å: Chain D: D.87, S.151 Ligands: ATP.10 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.87 MG.14: 3 residues within 4Å: Chain E: D.87, S.151 Ligands: ATP.13 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.87, E:D.87 MG.17: 3 residues within 4Å: Chain F: D.87, S.151 Ligands: ATP.16 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:D.87 MG.20: 3 residues within 4Å: Chain G: D.87, S.151 Ligands: ATP.19 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.87, G:D.87

7 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: T.30, K.51, T.90 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:K.51 K.6: 3 residues within 4Å: Chain B: T.30, K.51 Ligands: ATP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:K.51 K.9: 4 residues within 4Å: Chain C: T.30, K.51 Ligands: ATP.7, MG.8 No protein-ligand interaction detected (PLIP) K.12: 7 residues within 4Å: Chain D: T.30, K.51, A.52, G.53, T.89, T.90 Ligands: ATP.10 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:K.51 K.15: 4 residues within 4Å: Chain E: T.30, K.51, N.153 Ligands: ATP.13 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:T.30 K.18: 4 residues within 4Å: Chain F: T.30, K.51, T.90 Ligands: ATP.16 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:K.51 K.21: 3 residues within 4Å: Chain G: T.30, K.51 Ligands: ATP.19 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koike-Takeshita, A. et al., Crystal structure of a symmetric football-shaped GroEL:GroES2-ATP14 complex determined at 3.8 angstrom reveals rearrangement between two GroEL rings. J.Mol.Biol. (2014)

Release Date

2014-09-17

Peptides

60 kDa chaperonin: ABCDEFG
10 kDa chaperonin: HIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
O

I
P

J
Q

K
R

L
S

M
T

N
U

60 kDa chaperonin

10 kDa chaperonin

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