SMTL ID : 3wwo.1

S-selective hydroxynitrile lyase from Baliospermum montanum (apo1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: T.36, H.39, S.105, I.182, H.260, K.261 Ligands: MPD.2 No protein-ligand interaction detected (PLIP) CA.4: 7 residues within 4Å: Chain B: T.36, H.39, S.105, I.182, H.260, K.261 Ligands: MPD.5 No protein-ligand interaction detected (PLIP)

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 10 residues within 4Å: Chain A: T.36, I.37, S.105, G.106, L.131, F.146, F.203, I.234 Ligands: CA.1, MPD.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.37, A:L.131, A:F.146, A:F.203, A:I.234 Hydrogen bonds: A:T.36, A:S.105, A:S.105, A:G.106 MPD.3: 10 residues within 4Å: Chain A: I.37, Y.143, W.153, F.158, T.169, A.170, V.171, S.202, F.203 Ligands: MPD.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.37, A:W.153, A:T.169, A:V.171 Hydrogen bonds: A:F.203 MPD.5: 8 residues within 4Å: Chain B: T.36, I.37, S.105, G.106, L.131, H.260 Ligands: CA.4, MPD.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.36, B:I.37 Hydrogen bonds: B:S.105, B:S.105 MPD.6: 10 residues within 4Å: Chain B: Y.143, S.147, W.153, F.158, T.169, A.170, V.171, S.202, F.203 Ligands: MPD.5 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.143, B:W.153, B:F.158, B:F.158, B:T.169 Hydrogen bonds: B:F.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakano, S. et al., Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics. Biochim.Biophys.Acta (2014)

Release Date

2014-10-22

Peptides

(S)-hydroxynitrile lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

(S)-hydroxynitrile lyase

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