SMTL ID : 3wxm.3 (3 other biounits)

Crystal structure of archaeal Pelota and GTP-bound EF1 alpha complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 21 residues within 4Å: Chain A: V.18, D.19, H.20, G.21, K.22, S.23, T.24, S.55, F.56, A.59, I.73, T.74, G.96, H.97, N.155, K.156, D.158, S.196, A.197, W.198 Ligands: MG.2 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:D.19, A:H.20, A:G.21, A:K.22, A:S.23, A:T.24, A:T.24, A:S.55, A:S.55, A:T.74, A:G.96, A:H.97, A:N.155, A:K.156, A:K.156, A:S.196, A:A.197, A:W.198 Water bridges: A:S.23, A:S.23, A:S.23, A:T.74, A:T.74, A:R.121 Salt bridges: A:K.22, A:K.22, A:D.158

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: S.23, T.74, D.93 Ligands: GTP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.23, A:T.74, H2O.1, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobayashi, K. et al., Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1 alpha complex. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2014-09-03

Peptides

Elongation factor 1-alpha: A
Protein pelota homolog: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Elongation factor 1-alpha

Protein pelota homolog

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