SMTL ID : 3wye.1

Crystal Structure of chimeric engineered (2S,3S)-butanediol dehydrogenase complexed with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.89, V.109, A.137, A.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, G.188, M.189, W.190 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:P.182 Hydrogen bonds: A:G.9, A:G.11, A:Q.12, A:Q.12, A:I.14, A:Y.34, A:D.59, A:V.60, A:N.86, A:Y.152, A:K.156, A:G.183, A:V.185, A:T.187, A:T.187, A:G.188, A:M.189 Water bridges: A:Q.12, A:Q.12, A:G.15, A:G.15, A:N.35, A:G.188 NAD.2: 28 residues within 4Å: Chain B: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.89, V.109, A.137, A.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, G.188, M.189, W.190 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:P.182 Hydrogen bonds: B:G.9, B:G.11, B:Q.12, B:Q.12, B:I.14, B:Y.34, B:D.59, B:D.59, B:V.60, B:N.86, B:N.86, B:K.156, B:V.185, B:V.185, B:G.188, B:M.189 Water bridges: B:Q.12, B:G.15, B:G.15, B:N.35 NAD.3: 28 residues within 4Å: Chain C: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.89, V.109, A.137, A.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, G.188, M.189, W.190 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:P.182 Hydrogen bonds: C:G.9, C:G.11, C:Q.12, C:Q.12, C:I.14, C:Y.34, C:D.59, C:D.59, C:V.60, C:N.86, C:K.156, C:G.183, C:V.185, C:T.187, C:G.188, C:M.189 Water bridges: C:Q.12, C:Q.12, C:G.15, C:G.15, C:N.35, C:G.188 NAD.4: 28 residues within 4Å: Chain D: G.9, Q.12, G.13, I.14, D.33, Y.34, N.35, V.58, D.59, V.60, N.86, A.87, G.88, I.89, V.109, A.137, A.138, S.139, Y.152, K.156, P.182, G.183, I.184, V.185, T.187, G.188, M.189, W.190 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:P.182 Hydrogen bonds: D:G.9, D:G.11, D:Q.12, D:Q.12, D:I.14, D:Y.34, D:D.59, D:V.60, D:N.86, D:N.86, D:Y.152, D:K.156, D:V.185, D:V.185, D:T.187, D:G.188, D:M.189 Water bridges: D:Q.12, D:G.15, D:G.15, D:N.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimegi, T. et al., Crystal Structure of chimeric engineered (2S,3S)-butanediol dehydrogenase complexed with NAD+. To be Published

Release Date

2015-08-26

Peptides

Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming]