SMTL ID : 3wz1.1

Catalytic domain of beta-agarase from Microbulbifer thermotolerans JAMB-A94

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: D.4, D.28, G.72, D.267 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.4, A:D.267 Water bridges: A:N.30 NA.2: 4 residues within 4Å: Chain A: E.128, T.226, G.227, S.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.128, A:T.226, A:S.229

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: N.13, P.14, G.15, K.18, P.101, Y.192, R.194, P.274 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.14, A:K.18, A:Y.192 Water bridges: A:N.13 GOL.4: 7 residues within 4Å: Chain A: E.134, Y.136, H.151, H.155, Q.166, Q.241, W.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.134, A:Q.166, A:Q.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takagi, E. et al., Crystal structure of the catalytic domain of a GH16 beta-agarase from a deep-sea bacterium, Microbulbifer thermotolerans JAMB-A94. Biosci.Biotechnol.Biochem. (2015)

Release Date

2014-11-19

Peptides

Agarase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Agarase