SMTL ID : 3wz4.5 (7 other biounits)

Structure of the periplasmic domain of DotI (crystal form I)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 5 residues within 4Å: Chain A: N.57, K.64, L.66, E.105, Q.109 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.64, A:L.66 Hydrogen bonds: A:K.64 Water bridges: A:N.57 MRD.2: 7 residues within 4Å: Chain A: A.21, F.22, F.48, S.55, N.57, V.136 Ligands: MPD.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.48, A:F.48 Water bridges: A:N.57, A:N.57

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 10 residues within 4Å: Chain A: A.20, A.21, T.23, Y.24, Y.29, E.32, L.33, S.36, L.52 Ligands: MRD.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.24, A:Y.29, A:E.32, A:L.52 Hydrogen bonds: A:A.21 MPD.4: 8 residues within 4Å: Chain A: Q.80, K.81, G.82, V.83, L.84, S.89, R.91, L.116 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.84, A:L.116 Hydrogen bonds: A:Q.80, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuroda, T. et al., Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion. Sci Rep (2015)

Release Date

2015-06-10

Peptides

DotI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

DotI

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