SMTL ID : 3x02.1

Crystal structure of PIP4KIIBETA complex with GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

5 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 10 residues within 4Å: Chain A: F.116, V.125, N.180, V.181, F.182, K.191, T.214, L.259, I.345, D.346 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.180, A:N.180, A:V.181, A:K.191, A:T.214, A:T.214, A:D.346 Water bridges: A:N.180 5GP.2: 10 residues within 4Å: Chain A: K.73, Y.75, S.131, V.134, A.135, H.138, N.139, R.165, Y.174 Ligands: 5GP.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.75, A:S.131, A:N.139 Water bridges: A:N.139 Salt bridges: A:K.73, A:R.165 pi-Stacking: A:H.138, A:H.138 5GP.3: 3 residues within 4Å: Chain A: Q.270, E.274, E.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.274 5GP.4: 2 residues within 4Å: Chain A: A.135 Ligands: 5GP.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.135 5GP.5: 11 residues within 4Å: Chain B: F.116, V.125, K.127, N.180, V.181, F.182, K.191, T.214, L.259, I.345, D.346 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.180, B:N.180, B:N.180, B:V.181, B:K.191, B:T.214, B:D.346 Salt bridges: B:K.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sumita, K. et al., The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis. Mol.Cell (2016)

Release Date

2015-10-14

Peptides

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta

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