SMTL ID : 3x05.1

Crystal structure of PIP4KIIBETA T201M complex with AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 13 residues within 4Å: Chain A: F.116, V.125, K.127, M.178, R.179, N.180, V.181, F.182, K.191, T.214, L.259, I.345, D.346 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.181, A:K.191, A:K.191, A:D.346 Salt bridges: A:K.127 AMP.2: 11 residues within 4Å: Chain A: F.48, K.49, K.73, Y.75, S.131, V.134, A.135, H.138, N.139, R.165, Y.174 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.75 Salt bridges: A:K.73, A:R.165 pi-Stacking: A:H.138, A:H.138 AMP.3: 12 residues within 4Å: Chain B: F.116, V.125, K.127, R.179, N.180, V.181, F.182, K.191, T.214, L.259, I.345, D.346 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.181, B:K.191, B:D.346, B:D.346 Salt bridges: B:K.127 pi-Stacking: B:F.116 AMP.4: 10 residues within 4Å: Chain B: F.48, K.49, K.73, Y.75, S.131, V.134, A.135, H.138, R.165, Y.174 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.49, B:Y.75 Water bridges: B:K.73, B:K.73, B:R.165, B:R.165 Salt bridges: B:K.73, B:R.165 pi-Stacking: B:H.138, B:H.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sumita, K. et al., The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis. Mol.Cell (2016)

Release Date

2015-10-14

Peptides

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta

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