SMTL ID : 3x0c.1

Crystal structure of PIP4KIIBETA I368A complex with GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

4 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 10 residues within 4Å: Chain A: F.116, V.125, K.127, N.180, V.181, F.182, K.191, T.214, L.259, D.346 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.127, A:N.180, A:N.180, A:N.180, A:V.181, A:T.214, A:T.214, A:D.346, A:D.346 Salt bridges: A:K.127 5GP.2: 10 residues within 4Å: Chain A: K.73, Y.75, S.131, V.134, A.135, H.138, N.139, R.165, Y.174 Ligands: 5GP.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.75, A:N.139 Salt bridges: A:K.73, A:R.165 pi-Stacking: A:H.138, A:H.138 5GP.3: 2 residues within 4Å: Chain A: A.135 Ligands: 5GP.2 No protein-ligand interaction detected (PLIP) 5GP.4: 10 residues within 4Å: Chain B: K.49, K.73, Y.75, S.131, V.134, A.135, H.138, N.139, R.165, Y.174 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.75 Salt bridges: B:K.73, B:R.165 pi-Stacking: B:H.138, B:H.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sumita, K. et al., The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis. Mol.Cell (2016)

Release Date

2015-10-14

Peptides

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta

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