SMTL ID : 3x0g.1

Crystal structure of the ectodomain of African green monkey CD81 large extracellular loop (agmCD81-LEL)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 10 residues within 4Å: Chain A: V.14, F.41, V.45, K.84, I.85, F.88, F.89 Ligands: MPD.2, MPD.3, MPD.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.85, A:F.88, A:F.88, A:F.89 MPD.2: 9 residues within 4Å: Chain A: F.41, T.44, V.45 Chain B: F.17, V.37 Ligands: MPD.1, MPD.3, MPD.5, MPD.6 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.17, A:T.44, A:V.45 MPD.3: 10 residues within 4Å: Chain A: V.14, F.17, Y.18, V.37, F.41 Ligands: MPD.1, MPD.2, MPD.4, MPD.5, MPD.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.14, A:F.41 MPD.4: 10 residues within 4Å: Chain B: V.14, F.41, V.45, K.84, I.85, F.88, F.89 Ligands: MPD.3, MPD.5, MPD.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.85, B:F.88, B:F.88, B:F.89 MPD.5: 9 residues within 4Å: Chain A: F.17, V.37 Chain B: F.41, T.44, V.45 Ligands: MPD.2, MPD.3, MPD.4, MPD.6 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.44, B:V.45, A:F.17 MPD.6: 10 residues within 4Å: Chain B: V.14, F.17, Y.18, V.37, F.41 Ligands: MPD.1, MPD.2, MPD.3, MPD.4, MPD.5 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.14, B:F.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., An intramolecular bond at cluster of differentiation 81 ectodomain is important for hepatitis C virus entry. Faseb J. (2015)

Release Date

2015-07-01

Peptides

CD81: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CD81