SMTL ID : 3x1z.2 (1 other biounit)

Ras-related protein Rap1B(T65A) with GppNHp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain A: S.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, E.30, K.31, Y.32, P.34, T.35, G.60, T.61, N.116, K.117, D.119, L.120, S.147, A.148, K.149 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:K.16, A:S.17, A:S.17, A:A.18, A:V.29, A:T.35, A:T.35, A:G.60, A:T.61, A:T.61, A:N.116, A:K.117, A:K.117, A:S.147, A:A.148, A:K.149 Water bridges: A:D.33, A:T.61 Salt bridges: A:D.119 pi-Stacking: A:F.28

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.17, T.35 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.17, A:T.35, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noguchi, H. et al., The structure and conformational switching of Rap1B. Biochem.Biophys.Res.Commun. (2015)

Release Date

2015-06-03

Peptides

Ras-related protein Rap-1b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ras-related protein Rap-1b

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