SMTL ID : 3x3g.1

Fab fragment from anti TRAIL-R2 Human Agonist Antibody KMTR2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 2 residues within 4Å: Chain A: N.73, S.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.73

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.72 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: K.190, R.211 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: R.61, E.81 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: W.50, Y.106, Y.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.109, A:Y.109 SO4.4: 3 residues within 4Å: Chain A: Y.27, T.28, Y.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.28, A:N.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamada, T. et al., TRAIL-R2 Superoligomerization Induced by Human Monoclonal Agonistic Antibody KMTR2. Sci Rep (2015)

Release Date

2015-12-23

Peptides

Heavy chain of KMTR2: A
Light chain of KMTR2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Heavy chain of KMTR2

Light chain of KMTR2

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